Click here to switch to the map view.

The map label for this gene is rraA [C]

Identifier: 66045332

GI number: 66045332

Start: 2441280

End: 2441768

Strand: Direct

Name: rraA [C]

Synonym: Psyr_2092

Alternate gene names: 66045332

Gene position: 2441280-2441768 (Clockwise)

Preceding gene: 66045331

Following gene: 66045333

Centisome position: 40.06

GC content: 59.92

Gene sequence:

>489_bases
ATGCATTACCTCACCCCCGATCTGTGTGACGCCTATCCGGACCTGATTCAGGTCGTGGAGCCGATGTTCAGCAATTTTGG
CGGCCGCGATTCGTTTGGTGGCCAGATCGTCACGCTGAAATGTTTCGAGGACAACTCCAGGGTCAGGGAGCAGGTCGAGC
TCGACGGCAAGGGCAAGGTGCTGGTCGTCGACGGCGGCGGTTCGCTGCGTTGCGCGCTACTGGGTGACATGCTGGCAGAC
AAGGCTGCAAAGAACGGCTGGGAAGGCATGTTGATCTACGGCTGCATCCGCGACGTGGATGTCATCGCCCAGACCGACCT
GGGTGTCCAGGCGCTCGCCAGTCATCCGAAGAAAACCGAGAAGCGCGGCATAGGCGAGCTGAATGTGCCGGTGACCTTTG
GCGGCGTGACGTTCCGCCCGGGTGAGTACCTGTACGCCGACAACAATGGCGTCATCATTTCCCCATCAACCCTGACCATG
CCGGAATAA

Upstream 100 bases:

>100_bases
AGTTAGCCGTTAAAGTCGCTATGGTTACCGTCAGCCGGTCGTGTCTGTTTCAATGTCTGTATCACGCGCGACCTCATAGC
CGATGACAGGAGTTGCCCCC

Downstream 100 bases:

>100_bases
GCGAAGTATCCATGTTCGATGAAGCAAACGCGCAGTGGGGGCTGGTTCATGCCCTCGTTTTGGACGGTAAGGGTGGGGCG
CGTTTCATCGCTCGAACCGA

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MHYLTPDLCDAYPDLIQVVEPMFSNFGGRDSFGGQIVTLKCFEDNSRVREQVELDGKGKVLVVDGGGSLRCALLGDMLAD
KAAKNGWEGMLIYGCIRDVDVIAQTDLGVQALASHPKKTEKRGIGELNVPVTFGGVTFRPGEYLYADNNGVIISPSTLTM
PE

Sequences:

>Translated_162_residues
MHYLTPDLCDAYPDLIQVVEPMFSNFGGRDSFGGQIVTLKCFEDNSRVREQVELDGKGKVLVVDGGGSLRCALLGDMLAD
KAAKNGWEGMLIYGCIRDVDVIAQTDLGVQALASHPKKTEKRGIGELNVPVTFGGVTFRPGEYLYADNNGVIISPSTLTM
PE
>Mature_162_residues
MHYLTPDLCDAYPDLIQVVEPMFSNFGGRDSFGGQIVTLKCFEDNSRVREQVELDGKGKVLVVDGGGSLRCALLGDMLAD
KAAKNGWEGMLIYGCIRDVDVIAQTDLGVQALASHPKKTEKRGIGELNVPVTFGGVTFRPGEYLYADNNGVIISPSTLTM
PE

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=160, Percent_Identity=54.375, Blast_Score=180, Evalue=4e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17527; Mature: 17527

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYLTPDLCDAYPDLIQVVEPMFSNFGGRDSFGGQIVTLKCFEDNSRVREQVELDGKGKV
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHEEECCCCCE
LVVDGGGSLRCALLGDMLADKAAKNGWEGMLIYGCIRDVDVIAQTDLGVQALASHPKKTE
EEEECCCCEEHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCHHHHHCCCCCHH
KRGIGELNVPVTFGGVTFRPGEYLYADNNGVIISPSTLTMPE
HCCCCEECCCEEECCEEECCCCEEEECCCCEEECCCCCCCCC
>Mature Secondary Structure
MHYLTPDLCDAYPDLIQVVEPMFSNFGGRDSFGGQIVTLKCFEDNSRVREQVELDGKGKV
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHEEECCCCCE
LVVDGGGSLRCALLGDMLADKAAKNGWEGMLIYGCIRDVDVIAQTDLGVQALASHPKKTE
EEEECCCCEEHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCHHHHHCCCCCHH
KRGIGELNVPVTFGGVTFRPGEYLYADNNGVIISPSTLTMPE
HCCCCEECCCEEECCEEECCCCEEEECCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA