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The map label for this gene is cph2 [H]

Identifier: 66044541

GI number: 66044541

Start: 1461470

End: 1462831

Strand: Direct

Name: cph2 [H]

Synonym: Psyr_1293

Alternate gene names: 66044541

Gene position: 1461470-1462831 (Clockwise)

Preceding gene: 66044540

Following gene: 66044543

Centisome position: 23.98

GC content: 61.23

Gene sequence:

>1362_bases
ATGTCCTATGGGGCGGGTCTGCGGGACGAGCTACAGTTAATGCTATCCCGGGCCGATGGCTCTGACTCCGCAGGCGTGAT
CGTGCACTCACTCAAGGTTCTTATTCTCGAAGACCATCCCTTCCAGCTGATGGCTCTGCATCAGATGCTCAACGCCAATC
AAGTGTTCGATGTGCTGGTGGCCGACAGCGTCGAGGTCGCCAGGCTTTCGCTGCAAACCCGCGGTCCTGTCGACATCGCG
ATCTGCGACCTGCAGATGGAAGGGCCTGATGGTCTGGAACTGATCCGCCTCATGGCTGAGAACGGCCTGGCGCGAGCGCT
GATCATTGTCAGCTGTTCCGCCGCCTGCGTGCTGGAAGGGGCCGCGCAGCTGGCGCTCGCCCAAGGTCTGAATGTTCTGG
GGTATGTGCAGAAACCTGCTTCCGCCGGGGCGTTGTACGAGTTGCTCGAGGCCTATGGGCCTGGCCGCTCGGACTGTATA
GAGCAGGCATCGCCGGGCAGCGCGTTCAGAGCTCTTTCCGCCATCGAATTGTTTGACCCGACAGGCAGCGGACCGATAGA
CGTGGCGTCCATTGCCGAACAATGGATCACCTACTTTCAACCCAAGGTCAGTCTGCAGGGCGAGTTGCTGGGGGCCGAAG
CGTTGGTTCGCTGGCAGCATCCGGTGTATGGCCTGCTGGCCCCCGGGCGATTCATCAAGGCCATCGAGGCTGAAGGGCTG
ACCGTGGCGTTGACCTGGCGGGTGCTGGATCAGGCCCTGCAGTTCTCTGCGCAGGCCATGCGCGAGCAGGGCGAGCCGTT
GTCGGTTGCCGTCAACATTGACCCTCAAGTGCTGCAACAGCTGGATTTCGCCGAGCAGATCACGCAGGCGCTTGCCCGTC
ATGGCGTGCCGGCCACCGCGCTGACCCTGGAAATTATCGAGCAGGACGCCGCACGGCCGGAAACCTGGCAGCTCGAAGGC
CTGCTGAGGTTGTGCATGCAGGGTTGCAAGTTGTCCATCGATGACTTTGGCATGGGCGCTTCGAATATGGACCGGCTTCT
GCAATTACCTTTCAGCGAACTGAAAATACCGACCGAGTTCGTGCGCGGCATGGCCGACGACGCGCGTAAATCGGCGGTAG
TGGCCGGTGCCTTGCTCATGGCGCAGCGGCTGTCGATGTCGGTCGTGGTTGAAGGGGTCGAGACGATTGAAGACGTCCAC
AGTCTGCTGGCGCTGGGCGATCCGGCCATTCAAGGGTATTTCATTGCGCGCCCGATGCCTGCCTCGGCGTTCATGCGCTG
GATGGCTGAGCATGATAGCAGCCACCTGCACGCCGTTTCGAAGGACGACCGGCCTCAGGACATGCCGCTTTCCTGCAAAT
AA

Upstream 100 bases:

>100_bases
CCGGTCTGCGCGCGGATATCGAATTGCAACTGGTGGCCGTGCCCGAGACCGCGGTGCCAGGCGCTTGAATCCTGCGGAAA
ACCTGTGGCGTGTTTAGGAC

Downstream 100 bases:

>100_bases
ATGAACAGGGCAGCGTCATTGGCCAGTCCGAGCTTGCGCATGGCGGCGACTTTCTGGGCGCTGACGGTCTGTTTGCTGCG
ATTGAGTTGCGCCGCGATCT

Product: EAL:response regulator receiver

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 453; Mature: 452

Protein sequence:

>453_residues
MSYGAGLRDELQLMLSRADGSDSAGVIVHSLKVLILEDHPFQLMALHQMLNANQVFDVLVADSVEVARLSLQTRGPVDIA
ICDLQMEGPDGLELIRLMAENGLARALIIVSCSAACVLEGAAQLALAQGLNVLGYVQKPASAGALYELLEAYGPGRSDCI
EQASPGSAFRALSAIELFDPTGSGPIDVASIAEQWITYFQPKVSLQGELLGAEALVRWQHPVYGLLAPGRFIKAIEAEGL
TVALTWRVLDQALQFSAQAMREQGEPLSVAVNIDPQVLQQLDFAEQITQALARHGVPATALTLEIIEQDAARPETWQLEG
LLRLCMQGCKLSIDDFGMGASNMDRLLQLPFSELKIPTEFVRGMADDARKSAVVAGALLMAQRLSMSVVVEGVETIEDVH
SLLALGDPAIQGYFIARPMPASAFMRWMAEHDSSHLHAVSKDDRPQDMPLSCK

Sequences:

>Translated_453_residues
MSYGAGLRDELQLMLSRADGSDSAGVIVHSLKVLILEDHPFQLMALHQMLNANQVFDVLVADSVEVARLSLQTRGPVDIA
ICDLQMEGPDGLELIRLMAENGLARALIIVSCSAACVLEGAAQLALAQGLNVLGYVQKPASAGALYELLEAYGPGRSDCI
EQASPGSAFRALSAIELFDPTGSGPIDVASIAEQWITYFQPKVSLQGELLGAEALVRWQHPVYGLLAPGRFIKAIEAEGL
TVALTWRVLDQALQFSAQAMREQGEPLSVAVNIDPQVLQQLDFAEQITQALARHGVPATALTLEIIEQDAARPETWQLEG
LLRLCMQGCKLSIDDFGMGASNMDRLLQLPFSELKIPTEFVRGMADDARKSAVVAGALLMAQRLSMSVVVEGVETIEDVH
SLLALGDPAIQGYFIARPMPASAFMRWMAEHDSSHLHAVSKDDRPQDMPLSCK
>Mature_452_residues
SYGAGLRDELQLMLSRADGSDSAGVIVHSLKVLILEDHPFQLMALHQMLNANQVFDVLVADSVEVARLSLQTRGPVDIAI
CDLQMEGPDGLELIRLMAENGLARALIIVSCSAACVLEGAAQLALAQGLNVLGYVQKPASAGALYELLEAYGPGRSDCIE
QASPGSAFRALSAIELFDPTGSGPIDVASIAEQWITYFQPKVSLQGELLGAEALVRWQHPVYGLLAPGRFIKAIEAEGLT
VALTWRVLDQALQFSAQAMREQGEPLSVAVNIDPQVLQQLDFAEQITQALARHGVPATALTLEIIEQDAARPETWQLEGL
LRLCMQGCKLSIDDFGMGASNMDRLLQLPFSELKIPTEFVRGMADDARKSAVVAGALLMAQRLSMSVVVEGVETIEDVHS
LLALGDPAIQGYFIARPMPASAFMRWMAEHDSSHLHAVSKDDRPQDMPLSCK

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=240, Percent_Identity=32.0833333333333, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI87081921, Length=232, Percent_Identity=32.7586206896552, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1788502, Length=240, Percent_Identity=32.5, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1787055, Length=239, Percent_Identity=30.5439330543933, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87081980, Length=224, Percent_Identity=33.0357142857143, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786507, Length=248, Percent_Identity=26.2096774193548, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788849, Length=221, Percent_Identity=29.8642533936652, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI226510982, Length=291, Percent_Identity=29.2096219931272, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87081743, Length=235, Percent_Identity=28.0851063829787, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI87081845, Length=232, Percent_Identity=30.1724137931034, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082096, Length=200, Percent_Identity=31, Blast_Score=89, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 48906; Mature: 48775

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYGAGLRDELQLMLSRADGSDSAGVIVHSLKVLILEDHPFQLMALHQMLNANQVFDVLV
CCCCCCCHHHHHHHHHHCCCCCCCCHHEEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHH
ADSVEVARLSLQTRGPVDIAICDLQMEGPDGLELIRLMAENGLARALIIVSCSAACVLEG
HCCHHHHHEEECCCCCEEEEEEEEEECCCCHHHHHHHHHHCCCCEEEHEEECCHHHHHHH
AAQLALAQGLNVLGYVQKPASAGALYELLEAYGPGRSDCIEQASPGSAFRALSAIELFDP
HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHEECC
TGSGPIDVASIAEQWITYFQPKVSLQGELLGAEALVRWQHPVYGLLAPGRFIKAIEAEGL
CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCHHHHHHHCCCCEEECCCCHHHHHHCCCCE
TVALTWRVLDQALQFSAQAMREQGEPLSVAVNIDPQVLQQLDFAEQITQALARHGVPATA
EEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHH
LTLEIIEQDAARPETWQLEGLLRLCMQGCKLSIDDFGMGASNMDRLLQLPFSELKIPTEF
HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCHHHCCCCHHH
VRGMADDARKSAVVAGALLMAQRLSMSVVVEGVETIEDVHSLLALGDPAIQGYFIARPMP
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEECCCC
ASAFMRWMAEHDSSHLHAVSKDDRPQDMPLSCK
HHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
SYGAGLRDELQLMLSRADGSDSAGVIVHSLKVLILEDHPFQLMALHQMLNANQVFDVLV
CCCCCCHHHHHHHHHHCCCCCCCCHHEEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHH
ADSVEVARLSLQTRGPVDIAICDLQMEGPDGLELIRLMAENGLARALIIVSCSAACVLEG
HCCHHHHHEEECCCCCEEEEEEEEEECCCCHHHHHHHHHHCCCCEEEHEEECCHHHHHHH
AAQLALAQGLNVLGYVQKPASAGALYELLEAYGPGRSDCIEQASPGSAFRALSAIELFDP
HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHEECC
TGSGPIDVASIAEQWITYFQPKVSLQGELLGAEALVRWQHPVYGLLAPGRFIKAIEAEGL
CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCHHHHHHHCCCCEEECCCCHHHHHHCCCCE
TVALTWRVLDQALQFSAQAMREQGEPLSVAVNIDPQVLQQLDFAEQITQALARHGVPATA
EEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHH
LTLEIIEQDAARPETWQLEGLLRLCMQGCKLSIDDFGMGASNMDRLLQLPFSELKIPTEF
HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCHHHCCCCHHH
VRGMADDARKSAVVAGALLMAQRLSMSVVVEGVETIEDVHSLLALGDPAIQGYFIARPMP
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEECCCC
ASAFMRWMAEHDSSHLHAVSKDDRPQDMPLSCK
HHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]