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The map label for this gene is rimM [H]

Identifier: 66044531

GI number: 66044531

Start: 1449236

End: 1449775

Strand: Direct

Name: rimM [H]

Synonym: Psyr_1283

Alternate gene names: 66044531

Gene position: 1449236-1449775 (Clockwise)

Preceding gene: 66044530

Following gene: 66044532

Centisome position: 23.78

GC content: 53.89

Gene sequence:

>540_bases
ATGAACGCGACGCCTGCATCTGCCGACGATCTGATCGTCATTGGCAAGATTTACTCGGTTCATGGCGTTCGCGGCGAAGT
GAAGGTTTATTCCTTTACTGATCCGATTGGAAACCTGTTGGACTACAAAACCTGGACGCTTCGGCGCGAAGGCAGCGTTG
ATAAACAGGTGGAGCTGGTCAGCGGACGCTTGCAAAGCAAGTTTCTGGTCACAAAGCTCAAGGGTCTCGATGATCGTGAA
GAAGCGCGTCTTCTGTCCGGTTACGAAATCTGCGTGCCGCGTAACCTGTTCCCTGATCTGGACGATGGCGAGTACTACTG
GTACCAGCTTGAAGGCCTCAAGGTCATCGACCAACTCGGGCAACTGCTCGGGAAAATCGATCACCTGCTCGAAACCGGTT
CGAACGATGTAATGGTTGTAAAGCCCTGCGCGGGTAGCCTGGATGATCGCGAACGCCTGTTGCCCTATACGGAGCAATGC
GTGTTGGCAATCGATATGGCTGCTGGCGAGATGAAGGTGGATTGGGACGCGGACTTCTGA

Upstream 100 bases:

>100_bases
AACGCGTCAACTACTGGTTGAGCGTGGGTGCACAAACTTCCGAGCGCGTTGCCCAGCTGCTCAAAGAGCACAACAAGACC
AAGGCCGCGGCCTGAGTCTT

Downstream 100 bases:

>100_bases
ATGCCATGGCCAGCCTGCGCATAGAAGTCATCAGTCTGTTTCCCGAGATGTTTTCCGCCATCAGCGAATACGGCATTACC
AGCCGTGCGGTGAAACAAGG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MNATPASADDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELVSGRLQSKFLVTKLKGLDDRE
EARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVIDQLGQLLGKIDHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQC
VLAIDMAAGEMKVDWDADF

Sequences:

>Translated_179_residues
MNATPASADDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELVSGRLQSKFLVTKLKGLDDRE
EARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVIDQLGQLLGKIDHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQC
VLAIDMAAGEMKVDWDADF
>Mature_179_residues
MNATPASADDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELVSGRLQSKFLVTKLKGLDDRE
EARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVIDQLGQLLGKIDHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQC
VLAIDMAAGEMKVDWDADF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=178, Percent_Identity=37.6404494382022, Blast_Score=125, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20133; Mature: 20133

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNATPASADDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELV
CCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCHHHHHCCCEEEEEECCCCCHHHHHH
SGRLQSKFLVTKLKGLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVIDQLG
HHHHHHHHHHHHHCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHH
QLLGKIDHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVDWDADF
HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCCEEEEEEECCCCEEEECCCCC
>Mature Secondary Structure
MNATPASADDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELV
CCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCHHHHHCCCEEEEEECCCCCHHHHHH
SGRLQSKFLVTKLKGLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVIDQLG
HHHHHHHHHHHHHCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHH
QLLGKIDHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVDWDADF
HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCCEEEEEEECCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA