Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
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Accession | NC_007005 |
Length | 6,093,698 |
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The map label for this gene is 66044430
Identifier: 66044430
GI number: 66044430
Start: 1332278
End: 1334023
Strand: Reverse
Name: 66044430
Synonym: Psyr_1179
Alternate gene names: NA
Gene position: 1334023-1332278 (Counterclockwise)
Preceding gene: 66044431
Following gene: 66044429
Centisome position: 21.89
GC content: 63.12
Gene sequence:
>1746_bases ATGCTTTCGACCTCACCATCGACCCCTCTTGCCAGCCCTGTCGAGCGTGAGCTCAGTCTACGCGCGGTGATTACCGGGGT TGTGCTCGGTATCCTGTTGACGCCTTCCAATGTGTACGCCGGGTTGAAGATCGGCTGGTCGTTCAACATGTCGATCATTG CGCTGTTGATCGGTTATGCGATCTGGCAAGGGCTGTCGAAGCGCTCTTCCGGGCAGCTGCCGTGGACGCTGCATGAGAGC AACATCAACCAGACTGTCGCCTCCGCCGCTGCGTCGATCATTTCCGGCGGGCTGGTCGCACCGATTCCGGCTTATACCCT GCTGACGGGTCAGCAACTGGATGCCATCCCAATGATCGCCTGGGTCTTTTCGGTAAGCTTTCTGGGGATCTGGATTGCCT GGTATTTGCGCCCGTCACTGCTCAATGACGCATCGCTGAAATTCCCCGAAGGCATGGCCACTCTGGAAACCCTCCTGCAC ATCTACAATCACGGCCGTGAAGCTGCGACGCGCCTGAAGGTGCTGCTCAGTACCGCGTTGCTGTCAGCGCTGGCCAAGTG GGTCGACACGTTCATATGGGCGTTCCCGCGCTGGTCGCCGAGCGCTCAGTTGGAGCGCCTGACTTTTACCGCTGACCCTT CGCTGCTGCTGGTGGGGTTTGGGGCGATTATCGGTATTCGCGTCGGCCTGACTCTGCTGATCGGTGCCTTGCTGGCCTGG GGTGGCCTGGCGCCGTGGCTGCTGGAACAGGGGCTGGTGACGTTACCGGCCGACAGCAGCGGCCCGCAGTTCGCCGCGCT GGTGGAATGGTTGCTGTGGCCGGGCGTGAGCCTGATGGTCTGTTCGACGCTGGCCTCATTGGCCATCCGTCTGTGGACAC TGCACGCCTCCACCAAGGCCAGCGGCGGGACGCCCTGGTCAATGCCCAAGCCCGGGCCGGCCGCCGGGTTTGCGCTGGCG ATCCTGTTGGTGGTCAGCCTGCAGGCACTGTTGTTCGGTATCAATCTGTGGATGGCCTTGCTGACCATTCCTCTGGCGAT CTGCCTGGCGGCCGTTGCGGCGCGAGTGGTCGGTGCCACGGGTATTCCGCCCATCGGCGCAATCGGGCAGTTATCGCAAT TGAGCTTCGGCATCGTCGCGCCCGGTCAGGTGCCGATCAACCTGATGAGCGCCAACACAGCCGGCGGTTCAGCCGGGCAA TGCACCGATTTGATGAACGATTTCAAGGTAGGCCGGGCGATCGGCGCCACGCCGCGCAAGCAATTGATTGCCCAGACACT GGGGATTTTCGTCGGCAGTATCGTCGGGGTTCTGGCTTATATGGCGCTGATCCCGGACCCGCAATCGATGCTGCTCACCG AGGAATGGCCAGCCCCGGCGGTGGCGACCTGGAAAGCCGTGGCGCAGACCCTGACGCACGGTCTGGATTCGCTGTCGGCG AGCATCCGCTGGGCGATTTTCATCGGCGGTCTGGCCGGCTTGCTGCTGGGTATCCTCGACAGCACACTGCCCGCGCATCG CGCCCGGTACCTGCCCAGCGCCGCAGCACTGGGCCTGGCCTTCGTGCTTCCCGCCTCGGTGTCGTTGATGATGGCGCTCG GTGCAGTGCTCACCTGGCTGGTGAACTGTCGCTGGCCGTCACTGACCGAACGCTTTGCCATCACCGCAGCGGCTGGCCTG ATTGCCGGCGAGAGCATTACCGGCGTCGGTGCATCGCTGTGGCAGATGGTTCAGAACGGCGGGTAG
Upstream 100 bases:
>100_bases GCCTTAACGCCACTACACAACGAAGCCTGCCATATGAACCTTCGGCCGATATGGCGCTCACTTTATAGGTCGCCTTGTCT CATCGCCGAAAGGAATTCGC
Downstream 100 bases:
>100_bases TCGTGTGTCTGGCGCGACAGGCAAACTGCTATGCTTCGCGCCTGTGCAAACGGGTTGAAGAACATGAATCGTCGCAAGAA AATCCAGCAGTTGCTCAAGG
Product: OPT superfamily oligopeptide transporter
Products: NA
Alternate protein names: Oligopeptide Transporter OPT Superfamily; Oligopeptide Transporter Opt Superfamily Protein; Oligopeptide Transporter OPT Family; OPT Superfamily Oligopeptide Transporter; Integral Membrane Protein; Oligopeptide Transporter Opt Family
Number of amino acids: Translated: 581; Mature: 581
Protein sequence:
>581_residues MLSTSPSTPLASPVERELSLRAVITGVVLGILLTPSNVYAGLKIGWSFNMSIIALLIGYAIWQGLSKRSSGQLPWTLHES NINQTVASAAASIISGGLVAPIPAYTLLTGQQLDAIPMIAWVFSVSFLGIWIAWYLRPSLLNDASLKFPEGMATLETLLH IYNHGREAATRLKVLLSTALLSALAKWVDTFIWAFPRWSPSAQLERLTFTADPSLLLVGFGAIIGIRVGLTLLIGALLAW GGLAPWLLEQGLVTLPADSSGPQFAALVEWLLWPGVSLMVCSTLASLAIRLWTLHASTKASGGTPWSMPKPGPAAGFALA ILLVVSLQALLFGINLWMALLTIPLAICLAAVAARVVGATGIPPIGAIGQLSQLSFGIVAPGQVPINLMSANTAGGSAGQ CTDLMNDFKVGRAIGATPRKQLIAQTLGIFVGSIVGVLAYMALIPDPQSMLLTEEWPAPAVATWKAVAQTLTHGLDSLSA SIRWAIFIGGLAGLLLGILDSTLPAHRARYLPSAAALGLAFVLPASVSLMMALGAVLTWLVNCRWPSLTERFAITAAAGL IAGESITGVGASLWQMVQNGG
Sequences:
>Translated_581_residues MLSTSPSTPLASPVERELSLRAVITGVVLGILLTPSNVYAGLKIGWSFNMSIIALLIGYAIWQGLSKRSSGQLPWTLHES NINQTVASAAASIISGGLVAPIPAYTLLTGQQLDAIPMIAWVFSVSFLGIWIAWYLRPSLLNDASLKFPEGMATLETLLH IYNHGREAATRLKVLLSTALLSALAKWVDTFIWAFPRWSPSAQLERLTFTADPSLLLVGFGAIIGIRVGLTLLIGALLAW GGLAPWLLEQGLVTLPADSSGPQFAALVEWLLWPGVSLMVCSTLASLAIRLWTLHASTKASGGTPWSMPKPGPAAGFALA ILLVVSLQALLFGINLWMALLTIPLAICLAAVAARVVGATGIPPIGAIGQLSQLSFGIVAPGQVPINLMSANTAGGSAGQ CTDLMNDFKVGRAIGATPRKQLIAQTLGIFVGSIVGVLAYMALIPDPQSMLLTEEWPAPAVATWKAVAQTLTHGLDSLSA SIRWAIFIGGLAGLLLGILDSTLPAHRARYLPSAAALGLAFVLPASVSLMMALGAVLTWLVNCRWPSLTERFAITAAAGL IAGESITGVGASLWQMVQNGG >Mature_581_residues MLSTSPSTPLASPVERELSLRAVITGVVLGILLTPSNVYAGLKIGWSFNMSIIALLIGYAIWQGLSKRSSGQLPWTLHES NINQTVASAAASIISGGLVAPIPAYTLLTGQQLDAIPMIAWVFSVSFLGIWIAWYLRPSLLNDASLKFPEGMATLETLLH IYNHGREAATRLKVLLSTALLSALAKWVDTFIWAFPRWSPSAQLERLTFTADPSLLLVGFGAIIGIRVGLTLLIGALLAW GGLAPWLLEQGLVTLPADSSGPQFAALVEWLLWPGVSLMVCSTLASLAIRLWTLHASTKASGGTPWSMPKPGPAAGFALA ILLVVSLQALLFGINLWMALLTIPLAICLAAVAARVVGATGIPPIGAIGQLSQLSFGIVAPGQVPINLMSANTAGGSAGQ CTDLMNDFKVGRAIGATPRKQLIAQTLGIFVGSIVGVLAYMALIPDPQSMLLTEEWPAPAVATWKAVAQTLTHGLDSLSA SIRWAIFIGGLAGLLLGILDSTLPAHRARYLPSAAALGLAFVLPASVSLMMALGAVLTWLVNCRWPSLTERFAITAAAGL IAGESITGVGASLWQMVQNGG
Specific function: Unknown
COG id: COG1297
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6321324, Length=257, Percent_Identity=29.1828793774319, Blast_Score=85, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60873; Mature: 60873
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSTSPSTPLASPVERELSLRAVITGVVLGILLTPSNVYAGLKIGWSFNMSIIALLIGYA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECEEECCCCCHHHHHHHHHHH IWQGLSKRSSGQLPWTLHESNINQTVASAAASIISGGLVAPIPAYTLLTGQQLDAIPMIA HHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHH WVFSVSFLGIWIAWYLRPSLLNDASLKFPEGMATLETLLHIYNHGREAATRLKVLLSTAL HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH LSALAKWVDTFIWAFPRWSPSAQLERLTFTADPSLLLVGFGAIIGIRVGLTLLIGALLAW HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GGLAPWLLEQGLVTLPADSSGPQFAALVEWLLWPGVSLMVCSTLASLAIRLWTLHASTKA CCCCHHHHHCCCEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC SGGTPWSMPKPGPAAGFALAILLVVSLQALLFGINLWMALLTIPLAICLAAVAARVVGAT CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GIPPIGAIGQLSQLSFGIVAPGQVPINLMSANTAGGSAGQCTDLMNDFKVGRAIGATPRK CCCCCCCCCCHHHCCCCEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHH QLIAQTLGIFVGSIVGVLAYMALIPDPQSMLLTEEWPAPAVATWKAVAQTLTHGLDSLSA HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHH SIRWAIFIGGLAGLLLGILDSTLPAHRARYLPSAAALGLAFVLPASVSLMMALGAVLTWL HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VNCRWPSLTERFAITAAAGLIAGESITGVGASLWQMVQNGG HHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC >Mature Secondary Structure MLSTSPSTPLASPVERELSLRAVITGVVLGILLTPSNVYAGLKIGWSFNMSIIALLIGYA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECEEECCCCCHHHHHHHHHHH IWQGLSKRSSGQLPWTLHESNINQTVASAAASIISGGLVAPIPAYTLLTGQQLDAIPMIA HHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHH WVFSVSFLGIWIAWYLRPSLLNDASLKFPEGMATLETLLHIYNHGREAATRLKVLLSTAL HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH LSALAKWVDTFIWAFPRWSPSAQLERLTFTADPSLLLVGFGAIIGIRVGLTLLIGALLAW HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GGLAPWLLEQGLVTLPADSSGPQFAALVEWLLWPGVSLMVCSTLASLAIRLWTLHASTKA CCCCHHHHHCCCEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC SGGTPWSMPKPGPAAGFALAILLVVSLQALLFGINLWMALLTIPLAICLAAVAARVVGAT CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GIPPIGAIGQLSQLSFGIVAPGQVPINLMSANTAGGSAGQCTDLMNDFKVGRAIGATPRK CCCCCCCCCCHHHCCCCEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHH QLIAQTLGIFVGSIVGVLAYMALIPDPQSMLLTEEWPAPAVATWKAVAQTLTHGLDSLSA HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHH SIRWAIFIGGLAGLLLGILDSTLPAHRARYLPSAAALGLAFVLPASVSLMMALGAVLTWL HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VNCRWPSLTERFAITAAAGLIAGESITGVGASLWQMVQNGG HHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA