Click here to switch to the map view.

The map label for this gene is ppdD [H]

Identifier: 66044054

GI number: 66044054

Start: 905429

End: 905848

Strand: Direct

Name: ppdD [H]

Synonym: Psyr_0799

Alternate gene names: 66044054

Gene position: 905429-905848 (Clockwise)

Preceding gene: 66044048

Following gene: 66044056

Centisome position: 14.86

GC content: 49.52

Gene sequence:

>420_bases
ATGAATGCACAGAAGGGTTTTACGCTGATCGAATTGATGATCGTCGTCGCGATCGTTGGTATTTTGGCTGCGGTGGCGAT
TCCTCAATATCGTGATTATACGATGCGGGCGCGTTTCTCTGATGTCGTTTCTGTAGCCAGTACCTATCAGACTGCTGTTG
CAGTTTGCATACAGACTCAGGGCGTTGCGAATGGTTGTAATCTGAACACTAATGGTATTCCTGATACTCAAGCTACAGCC
AACGTAACCTCAGTAGCGGTGAACAATGGTGTGATTACCGTTGTTCCTACAGCTACTACAAACGTAGCCTCAACTTTGGT
CCTGACGCCAGTACTCGGTGCAGGTGGGATTACTTGGAACAAGGCTGGTAGCGGATGTCTGGCTGCGCAGGCCCCGGCAC
CGATTCTGTGTACGCTTTAA

Upstream 100 bases:

>100_bases
ACGCGCATTAACAGTATCAGCGCTTGAAAATGTGTTCTGGCACGACCTGTGCTTTCACGCTCTCGAGGCACCACCTAATT
GACGCCTCGGAGAAGTAGAT

Downstream 100 bases:

>100_bases
TTTCTTGATGATTATGTTACAAGTGCGAACTGTACCAGTTGCTTGAACCGCTGCGAACAGGCGGTTTGAGTAAGCGGATA
AGCTCAATCTTTTTACTGAT

Product: fimbrial protein pilin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MNAQKGFTLIELMIVVAIVGILAAVAIPQYRDYTMRARFSDVVSVASTYQTAVAVCIQTQGVANGCNLNTNGIPDTQATA
NVTSVAVNNGVITVVPTATTNVASTLVLTPVLGAGGITWNKAGSGCLAAQAPAPILCTL

Sequences:

>Translated_139_residues
MNAQKGFTLIELMIVVAIVGILAAVAIPQYRDYTMRARFSDVVSVASTYQTAVAVCIQTQGVANGCNLNTNGIPDTQATA
NVTSVAVNNGVITVVPTATTNVASTLVLTPVLGAGGITWNKAGSGCLAAQAPAPILCTL
>Mature_139_residues
MNAQKGFTLIELMIVVAIVGILAAVAIPQYRDYTMRARFSDVVSVASTYQTAVAVCIQTQGVANGCNLNTNGIPDTQATA
NVTSVAVNNGVITVVPTATTNVASTLVLTPVLGAGGITWNKAGSGCLAAQAPAPILCTL

Specific function: Not yet known [H]

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-Me-Phe pilin family [H]

Homologues:

Organism=Escherichia coli, GI1786297, Length=123, Percent_Identity=37.3983739837398, Blast_Score=85, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 14123; Mature: 14123

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAQKGFTLIELMIVVAIVGILAAVAIPQYRDYTMRARFSDVVSVASTYQTAVAVCIQTQ
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GVANGCNLNTNGIPDTQATANVTSVAVNNGVITVVPTATTNVASTLVLTPVLGAGGITWN
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEC
KAGSGCLAAQAPAPILCTL
CCCCCEEECCCCCCEEEEC
>Mature Secondary Structure
MNAQKGFTLIELMIVVAIVGILAAVAIPQYRDYTMRARFSDVVSVASTYQTAVAVCIQTQ
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GVANGCNLNTNGIPDTQATANVTSVAVNNGVITVVPTATTNVASTLVLTPVLGAGGITWN
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEC
KAGSGCLAAQAPAPILCTL
CCCCCEEECCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7959070; 8202364; 9278503 [H]