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The map label for this gene is yeaM [H]

Identifier: 66043916

GI number: 66043916

Start: 737097

End: 737900

Strand: Direct

Name: yeaM [H]

Synonym: Psyr_0649

Alternate gene names: 66043916

Gene position: 737097-737900 (Clockwise)

Preceding gene: 66043914

Following gene: 66043917

Centisome position: 12.1

GC content: 64.05

Gene sequence:

>804_bases
ATGCCGAGTAACGGACAGATCAATCAGCGGCAGCTCACAGGCGAACGGCAGATACCGGCCTTGTCCGGCCTGCCGCGCCC
GCTGTATGCCCGTGCCGAAAGTCTCAGCGCCGGTTCCTGGACGCCGCCCCATCGCCACGACTGGGTGCAGTTTTCCTACG
CGATCAGCGGGGTTCTGGGTGTGCATACCGCCGAGGGCAGTTTCTTTGCGCCGCCGCAGTGGGGCGTCTGGGTGCCTGCC
GGGCTCGAGCATGAGGTGGTGACCTCGATGCGCGCCGAAATGCGCAGCCTGTACATTCGCACGGCAGATTCGGGGTGGGC
ACCGCAGCGCTGCAGGGTACTGGAAGTCACGCCACTGGCCCGCGAGCTGATCAAGAGCTTCTGCCTGTTGCCCGTGGATT
ATCCCGAGCAGGACAGCCATGAGGCGCGGCTGGTGCAGGTGCTGCTGGATCAACTGGCGCAACTGCCCGAAGTGGGTTTT
TCACTGCCGTTGCCACGTCATCCGCGTTTGCTGGGGCTGTGCAATGAGTTGATCGAAGAGCCGGGGCGCTTGATCACCCT
GCACGACTGGGCCGCCCGCCTCGGGACCTCCGAGAAGACCCTGATGCGCCTGTTTCAGCGCGAAACCGGATTGAGCTTTC
GTGGCTGGCGGCAGCGGGCACGGCTGCTGTCTTCGCTGTCTGCACTGGAAGAGGGCGCCAGTGTGACGCGGACCGCGCTG
GCCTGCGGTTATGACTCGACGTCAGCGTTCATCGCAGCCTTCAAGGGTTTGTTCGGCCACACCCCCGGTGACTTGTTCAA
GTAA

Upstream 100 bases:

>100_bases
TTTGAGTGATTGCATACGGGGTCCGGAGAACTTTTGTAAACAGAGAGGCGTGCAGGCTACTCTGTTGCTCCATAGCCGTC
TTGCGACATAAGGCCATAAG

Downstream 100 bases:

>100_bases
GGCGTGGATGCCTTGTGCACTAACGAGTGCATCTAACGCTGTTTTTTCTGCTTTTACATGTTTTGTCCCGGAATATCTTT
CACCGGCTGTACGGCACGAA

Product: helix-turn-helix, AraC type:Arac protein, arabinose-binding/dimerisation

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MPSNGQINQRQLTGERQIPALSGLPRPLYARAESLSAGSWTPPHRHDWVQFSYAISGVLGVHTAEGSFFAPPQWGVWVPA
GLEHEVVTSMRAEMRSLYIRTADSGWAPQRCRVLEVTPLARELIKSFCLLPVDYPEQDSHEARLVQVLLDQLAQLPEVGF
SLPLPRHPRLLGLCNELIEEPGRLITLHDWAARLGTSEKTLMRLFQRETGLSFRGWRQRARLLSSLSALEEGASVTRTAL
ACGYDSTSAFIAAFKGLFGHTPGDLFK

Sequences:

>Translated_267_residues
MPSNGQINQRQLTGERQIPALSGLPRPLYARAESLSAGSWTPPHRHDWVQFSYAISGVLGVHTAEGSFFAPPQWGVWVPA
GLEHEVVTSMRAEMRSLYIRTADSGWAPQRCRVLEVTPLARELIKSFCLLPVDYPEQDSHEARLVQVLLDQLAQLPEVGF
SLPLPRHPRLLGLCNELIEEPGRLITLHDWAARLGTSEKTLMRLFQRETGLSFRGWRQRARLLSSLSALEEGASVTRTAL
ACGYDSTSAFIAAFKGLFGHTPGDLFK
>Mature_266_residues
PSNGQINQRQLTGERQIPALSGLPRPLYARAESLSAGSWTPPHRHDWVQFSYAISGVLGVHTAEGSFFAPPQWGVWVPAG
LEHEVVTSMRAEMRSLYIRTADSGWAPQRCRVLEVTPLARELIKSFCLLPVDYPEQDSHEARLVQVLLDQLAQLPEVGFS
LPLPRHPRLLGLCNELIEEPGRLITLHDWAARLGTSEKTLMRLFQRETGLSFRGWRQRARLLSSLSALEEGASVTRTALA
CGYDSTSAFIAAFKGLFGHTPGDLFK

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=223, Percent_Identity=35.8744394618834, Blast_Score=132, Evalue=3e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29709; Mature: 29578

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSNGQINQRQLTGERQIPALSGLPRPLYARAESLSAGSWTPPHRHDWVQFSYAISGVLG
CCCCCCCCHHHHCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
VHTAEGSFFAPPQWGVWVPAGLEHEVVTSMRAEMRSLYIRTADSGWAPQRCRVLEVTPLA
EEECCCCEECCCCCCEECCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEEECHHH
RELIKSFCLLPVDYPEQDSHEARLVQVLLDQLAQLPEVGFSLPLPRHPRLLGLCNELIEE
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
PGRLITLHDWAARLGTSEKTLMRLFQRETGLSFRGWRQRARLLSSLSALEEGASVTRTAL
CCCEEEEHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH
ACGYDSTSAFIAAFKGLFGHTPGDLFK
HCCCCCHHHHHHHHHHHHCCCCHHCCC
>Mature Secondary Structure 
PSNGQINQRQLTGERQIPALSGLPRPLYARAESLSAGSWTPPHRHDWVQFSYAISGVLG
CCCCCCCHHHHCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
VHTAEGSFFAPPQWGVWVPAGLEHEVVTSMRAEMRSLYIRTADSGWAPQRCRVLEVTPLA
EEECCCCEECCCCCCEECCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEEECHHH
RELIKSFCLLPVDYPEQDSHEARLVQVLLDQLAQLPEVGFSLPLPRHPRLLGLCNELIEE
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
PGRLITLHDWAARLGTSEKTLMRLFQRETGLSFRGWRQRARLLSSLSALEEGASVTRTAL
CCCEEEEHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH
ACGYDSTSAFIAAFKGLFGHTPGDLFK
HCCCCCHHHHHHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]