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The map label for this gene is ompB [H]

Identifier: 66043887

GI number: 66043887

Start: 708816

End: 711095

Strand: Direct

Name: ompB [H]

Synonym: Psyr_0620

Alternate gene names: 66043887

Gene position: 708816-711095 (Clockwise)

Preceding gene: 66043886

Following gene: 66043888

Centisome position: 11.63

GC content: 56.4

Gene sequence:

>2280_bases
ATGTTTCGCAAGACCCTTCTCGCAATGGCTATGGCTGCAACTGCTGTTCCGGCTTGTGCTGAAACAGTCGAATTGACCAA
CGCTGGCTTCAAGAGCGAGCGTCAGACCCATACCGGCAATCTCGAAATCAACGGTGCCTATTCGGGCAGTGCAGTTAAAG
ATGCGATCCAGCTAAGTGGTTCGACTATTGAAAAGGGTCTGATCCTCAACGCGAACATCAGCGGTTCCGGCAACTTTGCC
AGTGGGGAAGCAGCCAAAGGTATCAGCCTTGAGGGGGGCAAGATTAACGGCAGCGTCATTAACCGCAGCCTGGTTGACGT
TACTGGCCAAGGCGCGACGGCCCTGGATGTCGCCACGAGTCTGAAAGCTTTCGAAAACCATGGCAGCCTCTCCGCTAGCG
GCACGGGGTCTCAAGGTCTTCGAATCGACGGGGTCACCTTGATAGGCAATAGTGCGGATCTGATCAATACGGGGACGATC
CGCGGCGAGGGCGCTGCTATCGTGATGGGCACTACCAGGTTCGCTATGATCGGCGCTCAACCCTGGTACATAGAACGGGG
CGACTTCAATATCTACAACGACGGTTCGATCATTTCCGCTGACAGGGCCATCGACGCCTCTAAAAGCAATCGTCCGGTCG
AGCTGATCCTGAGAAAAGGCAGCGTCGTTGTCGGTAACCTGATCGACCTGAGCAATATCGAACTGGAAGGGGATACTTCC
TTCACAGGTACTGACAGCCGTACGGATGGCTACAACATTCGCCTCAAGAGCGGCGGATCGGTTTACGTTGGCGGCAGCTC
CGACAGTCCTACTACCATGACGTTCGAGTCCGCACACAGCAGCATTAATGGCGATCTGTATGTCGACGGCAACTCGGCGC
TCGGCCTGAATCTGAGCAAGGCCACTGATACTAAAACCGCGGTGCTGAAAGTTACCGGCATCACTCAGTTCGAACCGGGA
GCGCAAGTAAAGCTCGCGGCCAAGGGTGACGACTTCAGCGCCAACAGCACTGCTTACAAGCTTATCGAAGCAGGCAAGAT
CGAACTGCTGACCAAGGATGGAAACGCGGTCGATCCTGCCGGCAAACTCGATGTGGTCAGTACCTCGGCGCTGCTTAAAA
TCGACAGCTATACCGTTGACGGCAAAAACGTGGTGGCTGTGGTCACCGCCAAGGGCAGGGAAGAGGTCGCTCAGGTAGTT
GCCGACAACGGCGGTTCAGTTAATGAACAGACGACACTGGTCAACCTGACTGGCGATAGCATCATCAGCAAGCTGAACGA
CAGCGATGCGTTCAAACAGCTTTTGTTGAATGCTGACGGGGGGCAGCTCGCCAAGCTGGCCTCTCAGCTGTCGCCGGAGA
TCAACGGCGGGGCCAGAAGCGCCGCTACTACCAGCCAAGGCCTGATCAGCAATGTAACTGGCAGCCGCACCAGCTCGATA
CGCGGTGCTTCCTCTGGTGAGGGCTTCAAAGATGCAGGTGTCTGGGTCCAGTCGCTTTACAGCGACGCCACTCAAGGCCA
GCGTGACGGGATTGCTGGCTATAACGCTTACAGCAGCGGAGTCGCTGTGGGCGCTGACGGCAAACTCAATGACAACCTGA
CGCTGGGCCTGGCCTACAGCTTCATCAATACCGACGTGAATGGCAAAAGTGGCAACAAAACCGAAGTCGACAGCCATGCA
TTCACGTTGTATGGCGGCTTCGAGCAGGGCAATTACTTTGTCGATACAAGCCTGACTTACGGCTTCAATGACAATCAGGG
CAAACGCAGCATCGCCGGTACACGTGCCAAGGCTGATTATGACAGTGACCTGCTGGGGCTGAATCTGGTGGGTGGTTACA
CCTATCACGTCAGCCCGCAAGTCCTGGTCGAGCCGCGCGTGGCGGCGCGTTACAGCCAGGTGAATATCGACGGCTATCGC
GAGAAGGGTTCGTCGGCTGCGCTGAAGGTCGAAGATCAGCGTTATGAAACCGTTGAGCTGGGCGCAGGCATGCGCGTGGC
TGGCAGCTTCCTCTTGGGCGCCGGAACGCTGGAGCCACAGGCCAAGCTGATGGCCTACCATGACTTTGCCGCCGACGAAG
CGCAGAGCACGTCCACCTTTTTGCTCGGCAGTACACCGTTTGTAACCAGCGGTGCCAAGGCTGTGCGTGACAGTTACGAA
GCGGGTGTGGGTGCCGACTACAAACTGGGTGCAGTTACACTGGGCGTCAACTACGACTACATCGGGAAATCGGACTTCGA
TGCCGATGTGTTCTCCGCAAAAGTGCGTTACGACTTTTGA

Upstream 100 bases:

>100_bases
GCCGCGCTCTTCTGTGTGGCCAATCGCCACTTTTTTTGTAGCATGTACTCGCTACGCATGGAAGCGCCCCCAACATAAGG
AATGAATCGTGAACGCTGTG

Downstream 100 bases:

>100_bases
TGTGGAGTTACCGCCTCGGTCGAAAACGCTTGGGCGGTATCCTTGCCGTTGTGGTGGCGCTGCTGTTGAGCGGTGCCATT
TCCGGTTGTCAGTCGCCGCG

Product: Outer membrane autotransporter barrel

Products: NA

Alternate protein names: 168 kDa surface-layer protein; Cell surface antigen 5; Sca5; Surface protein antigen; rOmp B; rOmpB; 120 kDa outer membrane protein OmpB; Surface protein antigen; p120 [H]

Number of amino acids: Translated: 759; Mature: 759

Protein sequence:

>759_residues
MFRKTLLAMAMAATAVPACAETVELTNAGFKSERQTHTGNLEINGAYSGSAVKDAIQLSGSTIEKGLILNANISGSGNFA
SGEAAKGISLEGGKINGSVINRSLVDVTGQGATALDVATSLKAFENHGSLSASGTGSQGLRIDGVTLIGNSADLINTGTI
RGEGAAIVMGTTRFAMIGAQPWYIERGDFNIYNDGSIISADRAIDASKSNRPVELILRKGSVVVGNLIDLSNIELEGDTS
FTGTDSRTDGYNIRLKSGGSVYVGGSSDSPTTMTFESAHSSINGDLYVDGNSALGLNLSKATDTKTAVLKVTGITQFEPG
AQVKLAAKGDDFSANSTAYKLIEAGKIELLTKDGNAVDPAGKLDVVSTSALLKIDSYTVDGKNVVAVVTAKGREEVAQVV
ADNGGSVNEQTTLVNLTGDSIISKLNDSDAFKQLLLNADGGQLAKLASQLSPEINGGARSAATTSQGLISNVTGSRTSSI
RGASSGEGFKDAGVWVQSLYSDATQGQRDGIAGYNAYSSGVAVGADGKLNDNLTLGLAYSFINTDVNGKSGNKTEVDSHA
FTLYGGFEQGNYFVDTSLTYGFNDNQGKRSIAGTRAKADYDSDLLGLNLVGGYTYHVSPQVLVEPRVAARYSQVNIDGYR
EKGSSAALKVEDQRYETVELGAGMRVAGSFLLGAGTLEPQAKLMAYHDFAADEAQSTSTFLLGSTPFVTSGAKAVRDSYE
AGVGADYKLGAVTLGVNYDYIGKSDFDADVFSAKVRYDF

Sequences:

>Translated_759_residues
MFRKTLLAMAMAATAVPACAETVELTNAGFKSERQTHTGNLEINGAYSGSAVKDAIQLSGSTIEKGLILNANISGSGNFA
SGEAAKGISLEGGKINGSVINRSLVDVTGQGATALDVATSLKAFENHGSLSASGTGSQGLRIDGVTLIGNSADLINTGTI
RGEGAAIVMGTTRFAMIGAQPWYIERGDFNIYNDGSIISADRAIDASKSNRPVELILRKGSVVVGNLIDLSNIELEGDTS
FTGTDSRTDGYNIRLKSGGSVYVGGSSDSPTTMTFESAHSSINGDLYVDGNSALGLNLSKATDTKTAVLKVTGITQFEPG
AQVKLAAKGDDFSANSTAYKLIEAGKIELLTKDGNAVDPAGKLDVVSTSALLKIDSYTVDGKNVVAVVTAKGREEVAQVV
ADNGGSVNEQTTLVNLTGDSIISKLNDSDAFKQLLLNADGGQLAKLASQLSPEINGGARSAATTSQGLISNVTGSRTSSI
RGASSGEGFKDAGVWVQSLYSDATQGQRDGIAGYNAYSSGVAVGADGKLNDNLTLGLAYSFINTDVNGKSGNKTEVDSHA
FTLYGGFEQGNYFVDTSLTYGFNDNQGKRSIAGTRAKADYDSDLLGLNLVGGYTYHVSPQVLVEPRVAARYSQVNIDGYR
EKGSSAALKVEDQRYETVELGAGMRVAGSFLLGAGTLEPQAKLMAYHDFAADEAQSTSTFLLGSTPFVTSGAKAVRDSYE
AGVGADYKLGAVTLGVNYDYIGKSDFDADVFSAKVRYDF
>Mature_759_residues
MFRKTLLAMAMAATAVPACAETVELTNAGFKSERQTHTGNLEINGAYSGSAVKDAIQLSGSTIEKGLILNANISGSGNFA
SGEAAKGISLEGGKINGSVINRSLVDVTGQGATALDVATSLKAFENHGSLSASGTGSQGLRIDGVTLIGNSADLINTGTI
RGEGAAIVMGTTRFAMIGAQPWYIERGDFNIYNDGSIISADRAIDASKSNRPVELILRKGSVVVGNLIDLSNIELEGDTS
FTGTDSRTDGYNIRLKSGGSVYVGGSSDSPTTMTFESAHSSINGDLYVDGNSALGLNLSKATDTKTAVLKVTGITQFEPG
AQVKLAAKGDDFSANSTAYKLIEAGKIELLTKDGNAVDPAGKLDVVSTSALLKIDSYTVDGKNVVAVVTAKGREEVAQVV
ADNGGSVNEQTTLVNLTGDSIISKLNDSDAFKQLLLNADGGQLAKLASQLSPEINGGARSAATTSQGLISNVTGSRTSSI
RGASSGEGFKDAGVWVQSLYSDATQGQRDGIAGYNAYSSGVAVGADGKLNDNLTLGLAYSFINTDVNGKSGNKTEVDSHA
FTLYGGFEQGNYFVDTSLTYGFNDNQGKRSIAGTRAKADYDSDLLGLNLVGGYTYHVSPQVLVEPRVAARYSQVNIDGYR
EKGSSAALKVEDQRYETVELGAGMRVAGSFLLGAGTLEPQAKLMAYHDFAADEAQSTSTFLLGSTPFVTSGAKAVRDSYE
AGVGADYKLGAVTLGVNYDYIGKSDFDADVFSAKVRYDF

Specific function: The 32 kDa beta peptide may serve as a membrane anchor. It has been shown to adhere to biotinylated Vero cell proteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: 32 kDa beta peptide:Cell outer membrane; Multi-pass membrane protein (Potential). Note=The cleaved C- terminal fragment (autotransporter domain) is localized in the outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR006315
- InterPro:   IPR022095 [H]

Pfam domain/function: PF03797 Autotransporter; PF12334 rOmpB [H]

EC number: NA

Molecular weight: Translated: 78852; Mature: 78852

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRKTLLAMAMAATAVPACAETVELTNAGFKSERQTHTGNLEINGAYSGSAVKDAIQLSG
CCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCC
STIEKGLILNANISGSGNFASGEAAKGISLEGGKINGSVINRSLVDVTGQGATALDVATS
CEECCCEEEEEEECCCCCCCCCCCCCCEEECCCEECHHEECCEEEEECCCCCCHHHHHHH
LKAFENHGSLSASGTGSQGLRIDGVTLIGNSADLINTGTIRGEGAAIVMGTTRFAMIGAQ
HHHHHCCCCEEECCCCCCCEEEEEEEEECCCCCEEECCEECCCCCEEEEECCEEEEECCC
PWYIERGDFNIYNDGSIISADRAIDASKSNRPVELILRKGSVVVGNLIDLSNIELEGDTS
CEEEECCCEEEECCCCEEECCCCCCCCCCCCCEEEEEECCCEEEEEEEEECEEEECCCCC
FTGTDSRTDGYNIRLKSGGSVYVGGSSDSPTTMTFESAHSSINGDLYVDGNSALGLNLSK
CCCCCCCCCCEEEEEECCCEEEECCCCCCCCEEEEHHHCCCCCCCEEEECCCEEEEEECC
ATDTKTAVLKVTGITQFEPGAQVKLAAKGDDFSANSTAYKLIEAGKIELLTKDGNAVDPA
CCCCCEEEEEEECCEEECCCCCEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCCCCC
GKLDVVSTSALLKIDSYTVDGKNVVAVVTAKGREEVAQVVADNGGSVNEQTTLVNLTGDS
CCEEEEECEEEEEEEEEEECCCCEEEEEECCCHHHHHHHHHCCCCCCCCCEEEEEECCHH
IISKLNDSDAFKQLLLNADGGQLAKLASQLSPEINGGARSAATTSQGLISNVTGSRTSSI
HHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC
RGASSGEGFKDAGVWVQSLYSDATQGQRDGIAGYNAYSSGVAVGADGKLNDNLTLGLAYS
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEE
FINTDVNGKSGNKTEVDSHAFTLYGGFEQGNYFVDTSLTYGFNDNQGKRSIAGTRAKADY
EEECCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCC
DSDLLGLNLVGGYTYHVSPQVLVEPRVAARYSQVNIDGYREKGSSAALKVEDQRYETVEL
CCCEEEEEEECCEEEEECCEEEECCHHHHEEEEEECCCHHCCCCCEEEEEECCCEEEEEC
GAGMRVAGSFLLGAGTLEPQAKLMAYHDFAADEAQSTSTFLLGSTPFVTSGAKAVRDSYE
CCCCEEECEEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
AGVGADYKLGAVTLGVNYDYIGKSDFDADVFSAKVRYDF
CCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MFRKTLLAMAMAATAVPACAETVELTNAGFKSERQTHTGNLEINGAYSGSAVKDAIQLSG
CCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCC
STIEKGLILNANISGSGNFASGEAAKGISLEGGKINGSVINRSLVDVTGQGATALDVATS
CEECCCEEEEEEECCCCCCCCCCCCCCEEECCCEECHHEECCEEEEECCCCCCHHHHHHH
LKAFENHGSLSASGTGSQGLRIDGVTLIGNSADLINTGTIRGEGAAIVMGTTRFAMIGAQ
HHHHHCCCCEEECCCCCCCEEEEEEEEECCCCCEEECCEECCCCCEEEEECCEEEEECCC
PWYIERGDFNIYNDGSIISADRAIDASKSNRPVELILRKGSVVVGNLIDLSNIELEGDTS
CEEEECCCEEEECCCCEEECCCCCCCCCCCCCEEEEEECCCEEEEEEEEECEEEECCCCC
FTGTDSRTDGYNIRLKSGGSVYVGGSSDSPTTMTFESAHSSINGDLYVDGNSALGLNLSK
CCCCCCCCCCEEEEEECCCEEEECCCCCCCCEEEEHHHCCCCCCCEEEECCCEEEEEECC
ATDTKTAVLKVTGITQFEPGAQVKLAAKGDDFSANSTAYKLIEAGKIELLTKDGNAVDPA
CCCCCEEEEEEECCEEECCCCCEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCCCCC
GKLDVVSTSALLKIDSYTVDGKNVVAVVTAKGREEVAQVVADNGGSVNEQTTLVNLTGDS
CCEEEEECEEEEEEEEEEECCCCEEEEEECCCHHHHHHHHHCCCCCCCCCEEEEEECCHH
IISKLNDSDAFKQLLLNADGGQLAKLASQLSPEINGGARSAATTSQGLISNVTGSRTSSI
HHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC
RGASSGEGFKDAGVWVQSLYSDATQGQRDGIAGYNAYSSGVAVGADGKLNDNLTLGLAYS
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEE
FINTDVNGKSGNKTEVDSHAFTLYGGFEQGNYFVDTSLTYGFNDNQGKRSIAGTRAKADY
EEECCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCC
DSDLLGLNLVGGYTYHVSPQVLVEPRVAARYSQVNIDGYREKGSSAALKVEDQRYETVEL
CCCEEEEEEECCEEEEECCEEEECCHHHHEEEEEECCCHHCCCCCEEEEEECCCEEEEEC
GAGMRVAGSFLLGAGTLEPQAKLMAYHDFAADEAQSTSTFLLGSTPFVTSGAKAVRDSYE
CCCCEEECEEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
AGVGADYKLGAVTLGVNYDYIGKSDFDADVFSAKVRYDF
CCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2122457; 9823893; 1370573; 1729180 [H]