Click here to switch to the map view.

The map label for this gene is yfeT [C]

Identifier: 62390340

GI number: 62390340

Start: 1535993

End: 1536874

Strand: Reverse

Name: yfeT [C]

Synonym: cg1648

Alternate gene names: 62390340

Gene position: 1536874-1535993 (Counterclockwise)

Preceding gene: 62390341

Following gene: 62390335

Centisome position: 46.82

GC content: 59.07

Gene sequence:

>882_bases
GTGACCGTGTCGTGGCACCAAGCAACTGACGCTCCACCAAGCATCCGCATCACCACGCTTGCGCCATCGCTGCAGCCTAA
TCAGCGCAAAGTCGCCGAAGTCATGCTTGTCGACGCCCCCAGCATCGTCGAACTGACCGCTCAGGGCCTTGCAGATCGCG
TGGGGGTTGGGCGTGCCACCGTCATCCGCACCGCCCAGTCCTTAGGCTACGACGGATTCCCGCAGCTGCGCGTCGCCCTG
GCGCAGGAACTGGCACTGGCGCAGGGCGCGTCGAGAAGCATGGTTGAAGGAGCGTTAAGCTCCTCGTTGCTTGGTCATTT
GCAGGCGGGGATCTCTGATTTTCAAGCGTCGTTGGGCACGGTGGCCTCTGCGTTGACCGAAGATGATCTCACGCGCTGTA
TTGAGGGGCTGGATTCTGCGCGCCGGGTACTCGTGGCCTCTCATGGGCTGTCCGCGCCGTTGGGTTTGGATTTTTCGCAG
CGTTTGAACTCGATGGGTCGTTCAGCTGAAGTGCATTCTGATTCCATGTCGGAGCAGATTGTGGCTCGTCAATTAGGTGA
AGGTTCTGTCTGCTTCGCGATTTCTGGTTCAGGTGCCAGCAAAGCAACGCTTGCGACCATCGAAGCAGCACGTGCAGGTG
GGGCAACCATTATGGCGATGACATGTTTTGCGCATTCCGCCATCGATGTGGCCGCTGATGTGTCCTTGATCGTTCCCCCG
ATGACAGCCTCATTCCAAGATGAGCTCACCCGAACGTCACGGGCCGCGCTGATGTTGGTCTCTGAGCAATTAATCGAGCT
GCTCATCACTCACCGTGGCCAGGCAGCCGCTCAGGCGAGGGCCACATCGATGTCGATGATTGGCACCTCGCTGGAAGAGT
AA

Upstream 100 bases:

>100_bases
TGGGACACCGTGGGCATGCTGCTCATCGTCGTGGTTGTCGCAACGATGATCGTCGATCTCATCTCCGGCACCATCCGCCG
CCGCATCATGAAGGGGGCTA

Downstream 100 bases:

>100_bases
TCTAGCGGGTCATTCTCGGCATCGATAGCGCCGCCACCAGCAGGAAGCTCACGGCAAACGCGGCGCAGATGGCAATGTTG
ACCACTACTTGCTGTCCGAT

Product: RpiR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MTVSWHQATDAPPSIRITTLAPSLQPNQRKVAEVMLVDAPSIVELTAQGLADRVGVGRATVIRTAQSLGYDGFPQLRVAL
AQELALAQGASRSMVEGALSSSLLGHLQAGISDFQASLGTVASALTEDDLTRCIEGLDSARRVLVASHGLSAPLGLDFSQ
RLNSMGRSAEVHSDSMSEQIVARQLGEGSVCFAISGSGASKATLATIEAARAGGATIMAMTCFAHSAIDVAADVSLIVPP
MTASFQDELTRTSRAALMLVSEQLIELLITHRGQAAAQARATSMSMIGTSLEE

Sequences:

>Translated_293_residues
MTVSWHQATDAPPSIRITTLAPSLQPNQRKVAEVMLVDAPSIVELTAQGLADRVGVGRATVIRTAQSLGYDGFPQLRVAL
AQELALAQGASRSMVEGALSSSLLGHLQAGISDFQASLGTVASALTEDDLTRCIEGLDSARRVLVASHGLSAPLGLDFSQ
RLNSMGRSAEVHSDSMSEQIVARQLGEGSVCFAISGSGASKATLATIEAARAGGATIMAMTCFAHSAIDVAADVSLIVPP
MTASFQDELTRTSRAALMLVSEQLIELLITHRGQAAAQARATSMSMIGTSLEE
>Mature_292_residues
TVSWHQATDAPPSIRITTLAPSLQPNQRKVAEVMLVDAPSIVELTAQGLADRVGVGRATVIRTAQSLGYDGFPQLRVALA
QELALAQGASRSMVEGALSSSLLGHLQAGISDFQASLGTVASALTEDDLTRCIEGLDSARRVLVASHGLSAPLGLDFSQR
LNSMGRSAEVHSDSMSEQIVARQLGEGSVCFAISGSGASKATLATIEAARAGGATIMAMTCFAHSAIDVAADVSLIVPPM
TASFQDELTRTSRAALMLVSEQLIELLITHRGQAAAQARATSMSMIGTSLEE

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788767, Length=236, Percent_Identity=27.1186440677966, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87082130, Length=220, Percent_Identity=28.6363636363636, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 30458; Mature: 30327

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSWHQATDAPPSIRITTLAPSLQPNQRKVAEVMLVDAPSIVELTAQGLADRVGVGRAT
CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHEECCCHHHHHHHHHHHHHHCCCHHH
VIRTAQSLGYDGFPQLRVALAQELALAQGASRSMVEGALSSSLLGHLQAGISDFQASLGT
HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VASALTEDDLTRCIEGLDSARRVLVASHGLSAPLGLDFSQRLNSMGRSAEVHSDSMSEQI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHH
VARQLGEGSVCFAISGSGASKATLATIEAARAGGATIMAMTCFAHSAIDVAADVSLIVPP
HHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEECC
MTASFQDELTRTSRAALMLVSEQLIELLITHRGQAAAQARATSMSMIGTSLEE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TVSWHQATDAPPSIRITTLAPSLQPNQRKVAEVMLVDAPSIVELTAQGLADRVGVGRAT
CCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHEECCCHHHHHHHHHHHHHHCCCHHH
VIRTAQSLGYDGFPQLRVALAQELALAQGASRSMVEGALSSSLLGHLQAGISDFQASLGT
HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VASALTEDDLTRCIEGLDSARRVLVASHGLSAPLGLDFSQRLNSMGRSAEVHSDSMSEQI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHH
VARQLGEGSVCFAISGSGASKATLATIEAARAGGATIMAMTCFAHSAIDVAADVSLIVPP
HHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEECC
MTASFQDELTRTSRAALMLVSEQLIELLITHRGQAAAQARATSMSMIGTSLEE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]