Click here to switch to the map view.

The map label for this gene is nocM [H]

Identifier: 62390213

GI number: 62390213

Start: 1397032

End: 1397982

Strand: Reverse

Name: nocM [H]

Synonym: cg1503

Alternate gene names: 62390213

Gene position: 1397982-1397032 (Counterclockwise)

Preceding gene: 62390214

Following gene: 62390212

Centisome position: 42.59

GC content: 55.94

Gene sequence:

>951_bases
ATGTCAGATCTTAATCAAGGGCCTGGAGCTTCAACGGCCCAACCGAAACCGATTGAAGCCAAGCCACTACGCCACCCTGG
CCGGTGGGTCGCAGCCGCTATCATCGTGGCACTGCTCGCATGGTTTATCATCAGCGCGCTCAACAATGAGGCCTACGGTT
GGGATACCTACCGCTCGTATCTTTTTGACACCCGCATTGCCACCGCGGCACTTCACACCATTGCGCTGACCTTGCTGTCC
ATGATCTTGGGTGTGGTTCTCGGCGCAATCTTGGCCGTCATGCGTATGTCCGGCAACCCTGTCATGCAGGGCGTAGCGTG
GCTGTACCTGTGGATTTTCCGCGGCACCCCAATTTATGTGCAGTTGGTGTTCTGGGGCCTGCTGGGTTCCTTGTACCAGT
CGATCAACCTCGGTTTCGCAGAGATCGATCTGCAAAGCTTGCTGTCTAATATGTTCCTGCTCGCGGTGATCGGTCTGGGT
CTCAACGAGGCTGCGTACATGGCGGAAATCGTGCGCTCGGGCATCCAAGCGGTGCCTGAGGGCCAGATGGAGGCGTCGAA
AGCTTTGGGTATGAACTGGTCAATGACCATGCGTCGCACCATCTTGCCGCAGGCCATGCGCATCATCATTCCGCCAACCG
GCAATGAACTGATCTCCATGCTCAAGACCACCTCTCTGGTTGTTGCGATTCCTTATTCTCTCGAGCTGTACGGCCGCAGC
ATGGATATTGCGTACTCCCTCTTCGAGCCAGTTCCAATGCTTCTGGTTGCTGCGAGCTGGTACTTGGTCATCACCTCTAT
TCTTATGGTTGGTCAGTACTACCTGGAGAAGCACTTCGAAAAGGGCAGCACCCGCACCCTGACCGCACGTCAGCTCGCTG
CGTTGGCTGATGCTGAAGGCGCAATCCCGGGCAATGTCACCGTTGTTCCTGAAACTTCCAAGGAGAACTAG

Upstream 100 bases:

>100_bases
GGGCATTGAAGAAGGCCTTCTTGATGAGGCCCTGATCAACGAACAGCCACTCAACTAGAGCCTTCCAGCAACTAAAAACA
ATTAAAGGATTACTTCACAG

Downstream 100 bases:

>100_bases
CAAATGTCGCAACTGATGATTGATGCTCAGCAGGTCTGCAAAAACTACGGACGCTTGGAAGTGCTCAAGGGCATTGACTT
GCAGGTTCCTAAAGGTACCG

Product: ABC-type amino acid transport system, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MSDLNQGPGASTAQPKPIEAKPLRHPGRWVAAAIIVALLAWFIISALNNEAYGWDTYRSYLFDTRIATAALHTIALTLLS
MILGVVLGAILAVMRMSGNPVMQGVAWLYLWIFRGTPIYVQLVFWGLLGSLYQSINLGFAEIDLQSLLSNMFLLAVIGLG
LNEAAYMAEIVRSGIQAVPEGQMEASKALGMNWSMTMRRTILPQAMRIIIPPTGNELISMLKTTSLVVAIPYSLELYGRS
MDIAYSLFEPVPMLLVAASWYLVITSILMVGQYYLEKHFEKGSTRTLTARQLAALADAEGAIPGNVTVVPETSKEN

Sequences:

>Translated_316_residues
MSDLNQGPGASTAQPKPIEAKPLRHPGRWVAAAIIVALLAWFIISALNNEAYGWDTYRSYLFDTRIATAALHTIALTLLS
MILGVVLGAILAVMRMSGNPVMQGVAWLYLWIFRGTPIYVQLVFWGLLGSLYQSINLGFAEIDLQSLLSNMFLLAVIGLG
LNEAAYMAEIVRSGIQAVPEGQMEASKALGMNWSMTMRRTILPQAMRIIIPPTGNELISMLKTTSLVVAIPYSLELYGRS
MDIAYSLFEPVPMLLVAASWYLVITSILMVGQYYLEKHFEKGSTRTLTARQLAALADAEGAIPGNVTVVPETSKEN
>Mature_315_residues
SDLNQGPGASTAQPKPIEAKPLRHPGRWVAAAIIVALLAWFIISALNNEAYGWDTYRSYLFDTRIATAALHTIALTLLSM
ILGVVLGAILAVMRMSGNPVMQGVAWLYLWIFRGTPIYVQLVFWGLLGSLYQSINLGFAEIDLQSLLSNMFLLAVIGLGL
NEAAYMAEIVRSGIQAVPEGQMEASKALGMNWSMTMRRTILPQAMRIIIPPTGNELISMLKTTSLVVAIPYSLELYGRSM
DIAYSLFEPVPMLLVAASWYLVITSILMVGQYYLEKHFEKGSTRTLTARQLAALADAEGAIPGNVTVVPETSKEN

Specific function: Component of the nopaline active transport system probably consisting of four subunits:Q, M, P and T. This system is also capable of transporting octopine provided that catabolic functions are induced with nopaline [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=216, Percent_Identity=37.5, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788645, Length=200, Percent_Identity=36.5, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787087, Length=234, Percent_Identity=35.042735042735, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87082239, Length=277, Percent_Identity=28.8808664259928, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787030, Length=208, Percent_Identity=30.7692307692308, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1786874, Length=163, Percent_Identity=33.7423312883436, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788646, Length=232, Percent_Identity=30.1724137931034, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786873, Length=193, Percent_Identity=31.0880829015544, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787086, Length=182, Percent_Identity=33.5164835164835, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI48994930, Length=76, Percent_Identity=46.0526315789474, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34587; Mature: 34456

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00097 CARBAMOYLTRANSFERASE ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLNQGPGASTAQPKPIEAKPLRHPGRWVAAAIIVALLAWFIISALNNEAYGWDTYRSY
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LFDTRIATAALHTIALTLLSMILGVVLGAILAVMRMSGNPVMQGVAWLYLWIFRGTPIYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QLVFWGLLGSLYQSINLGFAEIDLQSLLSNMFLLAVIGLGLNEAAYMAEIVRSGIQAVPE
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
GQMEASKALGMNWSMTMRRTILPQAMRIIIPPTGNELISMLKTTSLVVAIPYSLELYGRS
CHHHHHHHCCCCCHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHEEEEECCCCEECCCC
MDIAYSLFEPVPMLLVAASWYLVITSILMVGQYYLEKHFEKGSTRTLTARQLAALADAEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
AIPGNVTVVPETSKEN
CCCCCEEEECCCCCCC
>Mature Secondary Structure 
SDLNQGPGASTAQPKPIEAKPLRHPGRWVAAAIIVALLAWFIISALNNEAYGWDTYRSY
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LFDTRIATAALHTIALTLLSMILGVVLGAILAVMRMSGNPVMQGVAWLYLWIFRGTPIYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QLVFWGLLGSLYQSINLGFAEIDLQSLLSNMFLLAVIGLGLNEAAYMAEIVRSGIQAVPE
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
GQMEASKALGMNWSMTMRRTILPQAMRIIIPPTGNELISMLKTTSLVVAIPYSLELYGRS
CHHHHHHHCCCCCHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHEEEEECCCCEECCCC
MDIAYSLFEPVPMLLVAASWYLVITSILMVGQYYLEKHFEKGSTRTLTARQLAALADAEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
AIPGNVTVVPETSKEN
CCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1732218; 11743193; 11743194 [H]