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The map label for this gene is yybE [H]

Identifier: 62389119

GI number: 62389119

Start: 235449

End: 236213

Strand: Reverse

Name: yybE [H]

Synonym: cg0272

Alternate gene names: 62389119

Gene position: 236213-235449 (Counterclockwise)

Preceding gene: 62389124

Following gene: 62389118

Centisome position: 7.2

GC content: 52.81

Gene sequence:

>765_bases
ATGACCAAACGGCTCAGCCTTGAAGGGCTCCGCTATGCGCAGGCCGTCGCAGAAACTCACTCATTCAGCGCAGCAGCCCG
CGAATACGGAGTCACCCAACCTGCGCTATCCAACGGCATCGCCAAACTGGAAGATCGGCTCGGTGAACAACTCTTCGATC
GATCTACTCAAGGCGTCACCCCGACGTCCTTTGGCCTCCACATCCTCCCCCTGATCCAACGCGCGCTGACTGAAATCGAC
GCAATCACCGCGGAAGCGCACCGTTTGATTAACTCAGAAGCACGCAGCATTCGAGTTGGAATCTCCCCACTTATCAACCC
TCAACTGGTTGCACGAACATATACCGCGGTTCGTGAGCTTCCCACAGCACACGACCTAGTACTCCGCGAAGCAAACATGA
AAGAACTACATGAAGGACTTCTTGCAGGTGAACTTAATGTAATTCTCATTCCCGCAGTGAAACCACTACCCCATTTTGAA
CACCGCATCATTGACTCCGAACCAGTCGTTATCGTCGAATCCACCCAGGACAGCACCGACCCCATAGAACTTCGCGAGAC
TCAGCACGAACCGTTCATTCTGGTACCCGACACATGCGGTTTAACCACTTTCACCAATCAACTGTTTGAAACAAATGACC
TGGCATTAAACGCCTATTCCGGCGAAGCAGCCAGCTACCAAGTACTCGAACAGTGGGCCACACTTGGACTCGGATCTGCA
ATGCTTCCACTTTCTAAACTCAGCTCCCCTACAGCACCCCATTGA

Upstream 100 bases:

>100_bases
CACTAAAGAACTTCTGAGCGCGCTATCGTTGGTCGATGCTATTGGTCTGGGTACTTCTCCGGTAGACCATCACTCTGAAT
AAGGGGGATAACATATAGTT

Downstream 100 bases:

>100_bases
CCACTCCGCGAACAAGGCCTCGACGTGGAAATCTTCTACGAAGCAGTGTGGTCACCTGGAACAAATTTATCCGAAGATAT
AGAGAAACTCGCGCGCCTAC

Product: transcription regulator LysR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MTKRLSLEGLRYAQAVAETHSFSAAAREYGVTQPALSNGIAKLEDRLGEQLFDRSTQGVTPTSFGLHILPLIQRALTEID
AITAEAHRLINSEARSIRVGISPLINPQLVARTYTAVRELPTAHDLVLREANMKELHEGLLAGELNVILIPAVKPLPHFE
HRIIDSEPVVIVESTQDSTDPIELRETQHEPFILVPDTCGLTTFTNQLFETNDLALNAYSGEAASYQVLEQWATLGLGSA
MLPLSKLSSPTAPH

Sequences:

>Translated_254_residues
MTKRLSLEGLRYAQAVAETHSFSAAAREYGVTQPALSNGIAKLEDRLGEQLFDRSTQGVTPTSFGLHILPLIQRALTEID
AITAEAHRLINSEARSIRVGISPLINPQLVARTYTAVRELPTAHDLVLREANMKELHEGLLAGELNVILIPAVKPLPHFE
HRIIDSEPVVIVESTQDSTDPIELRETQHEPFILVPDTCGLTTFTNQLFETNDLALNAYSGEAASYQVLEQWATLGLGSA
MLPLSKLSSPTAPH
>Mature_253_residues
TKRLSLEGLRYAQAVAETHSFSAAAREYGVTQPALSNGIAKLEDRLGEQLFDRSTQGVTPTSFGLHILPLIQRALTEIDA
ITAEAHRLINSEARSIRVGISPLINPQLVARTYTAVRELPTAHDLVLREANMKELHEGLLAGELNVILIPAVKPLPHFEH
RIIDSEPVVIVESTQDSTDPIELRETQHEPFILVPDTCGLTTFTNQLFETNDLALNAYSGEAASYQVLEQWATLGLGSAM
LPLSKLSSPTAPH

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=249, Percent_Identity=29.3172690763052, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790399, Length=167, Percent_Identity=26.3473053892216, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 27801; Mature: 27670

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKRLSLEGLRYAQAVAETHSFSAAAREYGVTQPALSNGIAKLEDRLGEQLFDRSTQGVT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
PTSFGLHILPLIQRALTEIDAITAEAHRLINSEARSIRVGISPLINPQLVARTYTAVREL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHC
PTAHDLVLREANMKELHEGLLAGELNVILIPAVKPLPHFEHRIIDSEPVVIVESTQDSTD
CCHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCEEEEECCCCCCC
PIELRETQHEPFILVPDTCGLTTFTNQLFETNDLALNAYSGEAASYQVLEQWATLGLGSA
CCHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCHH
MLPLSKLSSPTAPH
HHHHHHCCCCCCCC
>Mature Secondary Structure 
TKRLSLEGLRYAQAVAETHSFSAAAREYGVTQPALSNGIAKLEDRLGEQLFDRSTQGVT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
PTSFGLHILPLIQRALTEIDAITAEAHRLINSEARSIRVGISPLINPQLVARTYTAVREL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHC
PTAHDLVLREANMKELHEGLLAGELNVILIPAVKPLPHFEHRIIDSEPVVIVESTQDSTD
CCHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCEEEEECCCCCCC
PIELRETQHEPFILVPDTCGLTTFTNQLFETNDLALNAYSGEAASYQVLEQWATLGLGSA
CCHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCHH
MLPLSKLSSPTAPH
HHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]