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The map label for this gene is yddU [C]

Identifier: 62389078

GI number: 62389078

Start: 194602

End: 195039

Strand: Reverse

Name: yddU [C]

Synonym: cg0228

Alternate gene names: 62389078

Gene position: 195039-194602 (Counterclockwise)

Preceding gene: 62389081

Following gene: 62389076

Centisome position: 5.94

GC content: 52.51

Gene sequence:

>438_bases
ATGGTCGATTTTGACACCATCGCAGCCCGACTTGTCACCGAAACAGAAGAAGCAATCATCTACGCCACCCGCGATGGAAT
AATCAGACTCTGGAACGGCGGCTCCGAGAAACTCTTTGGATACACGGCCGGCGAAGCCCTTGGAAAATCACTCGACATCA
TCATTCCCGAAAAACACCGCAAGGCCCACTGGGACGGATGGGATCGCGTCATGGAATCCGGCGAAACTCGCTATGGCTCC
GAACCGCTTAACGTTCCAGGCATTCGTGCCGATGGATCCAAAATGTCTTTGGAATTCTCCATCACCATCCTGAAGGACGA
TTCCGGAAAAATCGAAGGCGTTGCAGCTTTTCTCCGCGATGTCACCGCCAATTGGGATGAGAAAAAGGCCCTGCGGATCC
GAATCAAAGAGTTGGAACGCCAAATCGAGGGCCATTAA

Upstream 100 bases:

>100_bases
AACCTATAGGAAAACGGGAGGTCAGATTACGCTCTTGTGTTACACATCACAGGATATGGTAGAAGATGTTCGCCTATCCA
CCCCGTGAAAGAAGATAAAA

Downstream 100 bases:

>100_bases
GGAGATTCTTGGGTGCGCGGTGAGGTTTTTTGATGGTATCGGGACATGCCGGTTCCAAATGCAAAAATTCGTTCAATTCA
TGTGGACTGACCACATGTTT

Product: sensor histidine kinase of two-component system, fragment

Products: NA

Alternate protein names: PAS Sensor Protein; Sensory Box Protein; Transcriptional Regulator; Multi-Sensor Signal Transduction Histidine Kinase; Sensor Histidine Kinase; PAS/PAC Sensor Hybrid Histidine Kinase; Multi-Sensor Hybrid Histidine Kinase; PAS/PAC Sensor Signal Transduction Histidine Kinase; Signal Transduction Histidine Kinase; Hybrid Sensor Histidine Kinase; Signal Sensor Protein Isolated PAS Domain; Signal-Transducing Histidine Kinase; Sensor Histidine Kinase Of Two-Component; Ethylene Response Sensor Protein; Two-Component Sensor Histidine Kinase Protein; PAS/PAC Domain-Containing Protein; Pas/Pac Sensor Hybrid Histidine Kinase; C-Like Stage II Sporulation E; Globin; Sensory Box Histidine Kinase; Hybrid Histidine Kinase; Two-Component System Sensory/Regulatory Protein Putative

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MVDFDTIAARLVTETEEAIIYATRDGIIRLWNGGSEKLFGYTAGEALGKSLDIIIPEKHRKAHWDGWDRVMESGETRYGS
EPLNVPGIRADGSKMSLEFSITILKDDSGKIEGVAAFLRDVTANWDEKKALRIRIKELERQIEGH

Sequences:

>Translated_145_residues
MVDFDTIAARLVTETEEAIIYATRDGIIRLWNGGSEKLFGYTAGEALGKSLDIIIPEKHRKAHWDGWDRVMESGETRYGS
EPLNVPGIRADGSKMSLEFSITILKDDSGKIEGVAAFLRDVTANWDEKKALRIRIKELERQIEGH
>Mature_145_residues
MVDFDTIAARLVTETEEAIIYATRDGIIRLWNGGSEKLFGYTAGEALGKSLDIIIPEKHRKAHWDGWDRVMESGETRYGS
EPLNVPGIRADGSKMSLEFSITILKDDSGKIEGVAAFLRDVTANWDEKKALRIRIKELERQIEGH

Specific function: Unknown

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16305; Mature: 16305

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50112 PAS ; PS50113 PAC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDFDTIAARLVTETEEAIIYATRDGIIRLWNGGSEKLFGYTAGEALGKSLDIIIPEKHR
CCCHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCEEEEEECHHHCCCEEEEEECCCCC
KAHWDGWDRVMESGETRYGSEPLNVPGIRADGSKMSLEFSITILKDDSGKIEGVAAFLRD
CCCCCHHHHHHHCCCCCCCCCCCCCCCEECCCCEEEEEEEEEEEECCCCCHHHHHHHHHH
VTANWDEKKALRIRIKELERQIEGH
HHCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVDFDTIAARLVTETEEAIIYATRDGIIRLWNGGSEKLFGYTAGEALGKSLDIIIPEKHR
CCCHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCEEEEEECHHHCCCEEEEEECCCCC
KAHWDGWDRVMESGETRYGSEPLNVPGIRADGSKMSLEFSITILKDDSGKIEGVAAFLRD
CCCCCHHHHHHHCCCCCCCCCCCCCCCEECCCCEEEEEEEEEEEECCCCCHHHHHHHHHH
VTANWDEKKALRIRIKELERQIEGH
HHCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA