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The map label for this gene is tctD [H]

Identifier: 62185575

GI number: 62185575

Start: 1139912

End: 1140625

Strand: Direct

Name: tctD [H]

Synonym: CAB977

Alternate gene names: 62185575

Gene position: 1139912-1140625 (Clockwise)

Preceding gene: 62185572

Following gene: 62185576

Centisome position: 99.61

GC content: 36.69

Gene sequence:

>714_bases
ATGCTTACGGATAAAATTATATTATTTGTTACTGAAGACAGCAGTATATCTGTGCAACTCAAAGAGTTTGCTCAGAATGT
AGAGTATAACATCGTTATCTCCTCCACTCTTACTGATACGCCTGAAGCTGATTTAATTTTCTGTGAATACCTACTTCTCC
CCGAATCTATCTTTTCTAGTAAAATCTCTTCAGAAACAGATTTAGTTGTATTATTTGATGCATTTGAAGAAGAGGCTATT
GTAAAAATTCTGAATAACGGTGCGAGCGGTTATCTACTACGCCCCATAACAGTCAAAGTTATCGACGCTGTTATTCGTGC
TTTTTTACGCAATCATCATCATTTCGAACATGCCATTCCTGAATCCATATCTTTTGGTGATCGAACGTTCCATCTTTTAC
ATCTTTCTATAGACTCACCTCAGGGAACTATCCATCTAACTCCTTCAGAAGCTGGAATATTAAAAAAACTCCTCATGAAT
CGTGGTCAGTTGTGTTTAAGAAAACACTTGCTTGAGGAAATAAAAGGAAACACCAAAGAAATTATAGCGCGAAATGTCGA
TGTACATATCGCTTCTTTAAGAAAAAAGCTCGGGCCTTATGGTTCTAAAATTTCTACAATTCGCGGTGTGGGTTATTTAT
TTTCAGAAAATGATCACCTACCTCCAGAATCCAAAGAAGAATCTTCGTCTCCCTATGCTTCGAATAGCTTTTGA

Upstream 100 bases:

>100_bases
TATTTTTAATCAGAAAAAAATTAAAAAATTGTAAAGGGTCTTTGAAAAATAAAAGATTTTGTATTACTTACTCAAATAAT
ATAGCCTACCTTGTTTGCTC

Downstream 100 bases:

>100_bases
TTACTCCTTGTCACTAAATCGTCATAACTAGACAATATCCTAAAAAGCTATGACCTGCCATGATACTCGCATCTGTTTTA
TTCTCTCCTGAAGATTTTTC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MLTDKIILFVTEDSSISVQLKEFAQNVEYNIVISSTLTDTPEADLIFCEYLLLPESIFSSKISSETDLVVLFDAFEEEAI
VKILNNGASGYLLRPITVKVIDAVIRAFLRNHHHFEHAIPESISFGDRTFHLLHLSIDSPQGTIHLTPSEAGILKKLLMN
RGQLCLRKHLLEEIKGNTKEIIARNVDVHIASLRKKLGPYGSKISTIRGVGYLFSENDHLPPESKEESSSPYASNSF

Sequences:

>Translated_237_residues
MLTDKIILFVTEDSSISVQLKEFAQNVEYNIVISSTLTDTPEADLIFCEYLLLPESIFSSKISSETDLVVLFDAFEEEAI
VKILNNGASGYLLRPITVKVIDAVIRAFLRNHHHFEHAIPESISFGDRTFHLLHLSIDSPQGTIHLTPSEAGILKKLLMN
RGQLCLRKHLLEEIKGNTKEIIARNVDVHIASLRKKLGPYGSKISTIRGVGYLFSENDHLPPESKEESSSPYASNSF
>Mature_237_residues
MLTDKIILFVTEDSSISVQLKEFAQNVEYNIVISSTLTDTPEADLIFCEYLLLPESIFSSKISSETDLVVLFDAFEEEAI
VKILNNGASGYLLRPITVKVIDAVIRAFLRNHHHFEHAIPESISFGDRTFHLLHLSIDSPQGTIHLTPSEAGILKKLLMN
RGQLCLRKHLLEEIKGNTKEIIARNVDVHIASLRKKLGPYGSKISTIRGVGYLFSENDHLPPESKEESSSPYASNSF

Specific function: Transcriptional activator of the tctI tricarboxylate transport system operon [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786599, Length=186, Percent_Identity=27.4193548387097, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790552, Length=135, Percent_Identity=29.6296296296296, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26521; Mature: 26521

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTDKIILFVTEDSSISVQLKEFAQNVEYNIVISSTLTDTPEADLIFCEYLLLPESIFSS
CCCCEEEEEEECCCCEEEEHHHHHCCCEEEEEEECCCCCCCCCCEEHHHHHHCCHHHHHH
KISSETDLVVLFDAFEEEAIVKILNNGASGYLLRPITVKVIDAVIRAFLRNHHHFEHAIP
HCCCCCCEEEEEECCCHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHCCCHHHHHCC
ESISFGDRTFHLLHLSIDSPQGTIHLTPSEAGILKKLLMNRGQLCLRKHLLEEIKGNTKE
CCCCCCCCEEEEEEEEECCCCCEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHH
IIARNVDVHIASLRKKLGPYGSKISTIRGVGYLFSENDHLPPESKEESSSPYASNSF
HHHHCCCHHHHHHHHHHCCCCCHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLTDKIILFVTEDSSISVQLKEFAQNVEYNIVISSTLTDTPEADLIFCEYLLLPESIFSS
CCCCEEEEEEECCCCEEEEHHHHHCCCEEEEEEECCCCCCCCCCEEHHHHHHCCHHHHHH
KISSETDLVVLFDAFEEEAIVKILNNGASGYLLRPITVKVIDAVIRAFLRNHHHFEHAIP
HCCCCCCEEEEEECCCHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHCCCHHHHHCC
ESISFGDRTFHLLHLSIDSPQGTIHLTPSEAGILKKLLMNRGQLCLRKHLLEEIKGNTKE
CCCCCCCCEEEEEEEEECCCCCEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHH
IIARNVDVHIASLRKKLGPYGSKISTIRGVGYLFSENDHLPPESKEESSSPYASNSF
HHHHCCCHHHHHHHHHHCCCCCHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2666399; 11083839; 11677609 [H]