| Definition | Chlamydophila abortus S26/3, complete genome. |
|---|---|
| Accession | NC_004552 |
| Length | 1,144,377 |
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The map label for this gene is topA [H]
Identifier: 62185557
GI number: 62185557
Start: 1118928
End: 1121546
Strand: Direct
Name: topA [H]
Synonym: CAB958
Alternate gene names: 62185557
Gene position: 1118928-1121546 (Clockwise)
Preceding gene: 62185555
Following gene: 62185560
Centisome position: 97.78
GC content: 40.7
Gene sequence:
>2619_bases ATGAAAAAATCCTTAATCGTAGTGGAATCTCCCGCTAAAATTAAAACCTTACAAAAACTCTTAGGGAAAGGTTTTATTTT TGCTTCATCACTAGGACATGTTGTTGACCTTCCCGCAAAGGAATTTGGTATCGATATCGAACAGGATTTCGAACCTGACT ATCAAATTCTTCCTGATAAACAAGAAGTTATCAGTCAAATTCGTAAATTAGCCTCCAGTTGTGATATTGTTTATCTCTCT CCTGACCCCGATCGCGAAGGAGAAGCGATTGCCTGGCATATTGCCAATCAGCTGCCTAAACATACGCGTATCCAAAGGAT ATCCTTCAATGCGATTACCAAAGGTGCTGTGAATGAGGCATTAAAGCATCCTCGAGAAATCGATATGGCTTTAGTCAATG CGCAACAAGCCCGTCGCCTGTTAGATCGTATTGTTGGTTACAAAATTTCTCCTATTTTAAGTCGTAAGCTACAACAAAGA TCGGGCATATCGGCAGGACGCGTGCAATCCGTAGCTCTCAAGCTGGTGGTTGATCGTGAAAAAGCTATCGAAGCCTTTGT ACCTACTGAATATTGGAATATTCGTGTTTTCCTCCAAGATCCTAAAACATCTACGACATTCTGGGCCCACCTATATTCTG CCGAAGGGAAAAAGTGGGAAAAAGAACTCCCTAAGGGGAAAACCGAAGATGAAATTTTATTAATTCAATCCGAAGCTCAA GCACAACATTATGTTGCGCTGTTAGAAGATGCTGCCTACAGAGTGACTCGCGTAGAAGTGAAAGAAAAACGACGTAATGC AGCGCCGCCATTTATTACATCCACCTTGCAACAAGAAGCAAGTCGTCATTTCAGATTTTCTTCTTCTAAAACTATGTCAG TGGCTCAAACCTTATATGAAGGTGTTGAGTTAGATAACGAAGATGCCACAGGATTAATTACTTATATGCGTACAGATTCT GTACGTATTGATCCCGAGGCATTAAGTAACGTTAGAGATTATATACACAACACATTTGGACAAGAATACCTTCCGAAGTC TCCTAATGTCTACACCACGAAAAAGATGACTCAAGATGCTCACGAAGCTATTCGCCCTACAGATATCCATTTATCTCCCG ATAAGCTTGAAGGGAAACTCTCCGATGATCAACTCAAGCTGTATTCTCTGATTTGGAAACGTTTTGTTGCTTCCCAGATG AATCCTGCGATTTACGATACGTTAGCGATGACGATTTCAACGAATGTGAAAATAGATTTGCGTGCTTCTGGATCGTTATT GAAATTTAAAGGTTTTCTCGCAGTATACGAAGAAAAACTCGATGATGATACAACCGAAGAAGAAAATCTCTCGCTTCCTC AACTACACGCTCAGGACGTTTTAGATAAGGAAAAGGTTTCAGCAGAGCAAGCTTTTACAAAACCTTTGCCAAGGTTTACA GAAGCGTCTTTAGTAAAAGAGTTAGAAAAATCAGGCATTGGTCGTCCCTCAACGTACGCAACGATTATGAATAAAATTCA AAGTCGTGAGTATACTATTAAGGAAAATCAGCGCTTACGCCCTACAGAACTCGGAAAAATTATCTCGCAATTTCTTGAGA CAAACTTTCCTCGGATTATGGACATAGGTTTTACAGCTCTTATGGAAGATGAGCTAGAACTTATTGCTGATAATAAAAAG TCTTGGAAATTACTTCTTAAGGAATTTTGGGACCAATTTCTTCCTGTAGTTACTGCTGCAGAAAAAGAAGCTGTGATCCC TCGCGTGCTCACCGATATCACATGTTCTGCATGTCATAAAGGAAAACTTGTGAAAATCTGGGCAAAAAATCGTTATTTTT ACGGGTGTTCCGAATACCCTGAGTGCGACTTTAAAACTTCTGAAGAAGAACTTGCTTTCAATAAAGACGATTATGCTGTT GATACACCTTGGAATAGCCCTTGCCCTGTTTGCGGTGGAGATATGAAAGTCCGCCACGGACGTTTTGGCACATTTTTAGG ATGCTTAAACTATCCTCAATGTCGTGGAACGATTTCCATTCATAAGAAAGGCGAGGAAGTAGAAAAAGAAGAAACCCTTC CCTGTCCTGCTGTGGGCTGCTCAGGGAAAATTTTAAAGAAACGTTCGCGTTATAATAAAACATTCTATTCTTGCTCAGAA TATCCTGACTGCAGTGTGATAGGCAATACCATAGATGCTGTTATTACAAAGTACACAGGAACTCCAAAAACGCCGTACGA AAAGAAAACAACAGGGAAGAAAAAAGCTACTACAAAATCCAGCAGCAAAACGACGAAAACAACGACTAAAAAAAAGAAAA GCGAAGGAAAGACGCCAAAAACCCCTAAAGCCGGGGCATTACTTACACCCTCGCCTCAATTAGCGCTGATGATTGGCCCA GAACCTTTAGGACGTGGAGAAGCCACGAAGAAAGTCTGGCAATACATCAAGGACCATAATCTACAATCCCCTGAGAATAA AAAGATGTTGCTGCCTGACGATAAGTTTGCAGCGATTATTGGCCCAGAACCTGTGGATATGTTCCAATTGCCCAAACTAT TAAATCAGCATTTATTCAAATCGGATGTCTCCCCAGGCTCATCATCAGCTTCTTCATAA
Upstream 100 bases:
>100_bases GTTGCTTGCATGAGGATTTTTTTTAGATAGGGAATAAAAACAATAAAAAAGGAGAGGCGGTTTTACTCCAAGTAAAATGC GGAGTTCGCCATTAATATAA
Downstream 100 bases:
>100_bases TCCTCAATCAGCTGATAGACTTCTTGCACTGAGGTAGCTTTAGATAAAGCCGAGCGAAGAAACCGCACTTTAGAAGCCGA TATTAAATAGTGGCCGCAAA
Product: DNA topoisomerase I/SWI domain fusion protein
Products: NA
Alternate protein names: DNA topoisomerase I; Omega-protein; Relaxing enzyme; Swivelase; Untwisting enzyme [H]
Number of amino acids: Translated: 872; Mature: 872
Protein sequence:
>872_residues MKKSLIVVESPAKIKTLQKLLGKGFIFASSLGHVVDLPAKEFGIDIEQDFEPDYQILPDKQEVISQIRKLASSCDIVYLS PDPDREGEAIAWHIANQLPKHTRIQRISFNAITKGAVNEALKHPREIDMALVNAQQARRLLDRIVGYKISPILSRKLQQR SGISAGRVQSVALKLVVDREKAIEAFVPTEYWNIRVFLQDPKTSTTFWAHLYSAEGKKWEKELPKGKTEDEILLIQSEAQ AQHYVALLEDAAYRVTRVEVKEKRRNAAPPFITSTLQQEASRHFRFSSSKTMSVAQTLYEGVELDNEDATGLITYMRTDS VRIDPEALSNVRDYIHNTFGQEYLPKSPNVYTTKKMTQDAHEAIRPTDIHLSPDKLEGKLSDDQLKLYSLIWKRFVASQM NPAIYDTLAMTISTNVKIDLRASGSLLKFKGFLAVYEEKLDDDTTEEENLSLPQLHAQDVLDKEKVSAEQAFTKPLPRFT EASLVKELEKSGIGRPSTYATIMNKIQSREYTIKENQRLRPTELGKIISQFLETNFPRIMDIGFTALMEDELELIADNKK SWKLLLKEFWDQFLPVVTAAEKEAVIPRVLTDITCSACHKGKLVKIWAKNRYFYGCSEYPECDFKTSEEELAFNKDDYAV DTPWNSPCPVCGGDMKVRHGRFGTFLGCLNYPQCRGTISIHKKGEEVEKEETLPCPAVGCSGKILKKRSRYNKTFYSCSE YPDCSVIGNTIDAVITKYTGTPKTPYEKKTTGKKKATTKSSSKTTKTTTKKKKSEGKTPKTPKAGALLTPSPQLALMIGP EPLGRGEATKKVWQYIKDHNLQSPENKKMLLPDDKFAAIIGPEPVDMFQLPKLLNQHLFKSDVSPGSSSASS
Sequences:
>Translated_872_residues MKKSLIVVESPAKIKTLQKLLGKGFIFASSLGHVVDLPAKEFGIDIEQDFEPDYQILPDKQEVISQIRKLASSCDIVYLS PDPDREGEAIAWHIANQLPKHTRIQRISFNAITKGAVNEALKHPREIDMALVNAQQARRLLDRIVGYKISPILSRKLQQR SGISAGRVQSVALKLVVDREKAIEAFVPTEYWNIRVFLQDPKTSTTFWAHLYSAEGKKWEKELPKGKTEDEILLIQSEAQ AQHYVALLEDAAYRVTRVEVKEKRRNAAPPFITSTLQQEASRHFRFSSSKTMSVAQTLYEGVELDNEDATGLITYMRTDS VRIDPEALSNVRDYIHNTFGQEYLPKSPNVYTTKKMTQDAHEAIRPTDIHLSPDKLEGKLSDDQLKLYSLIWKRFVASQM NPAIYDTLAMTISTNVKIDLRASGSLLKFKGFLAVYEEKLDDDTTEEENLSLPQLHAQDVLDKEKVSAEQAFTKPLPRFT EASLVKELEKSGIGRPSTYATIMNKIQSREYTIKENQRLRPTELGKIISQFLETNFPRIMDIGFTALMEDELELIADNKK SWKLLLKEFWDQFLPVVTAAEKEAVIPRVLTDITCSACHKGKLVKIWAKNRYFYGCSEYPECDFKTSEEELAFNKDDYAV DTPWNSPCPVCGGDMKVRHGRFGTFLGCLNYPQCRGTISIHKKGEEVEKEETLPCPAVGCSGKILKKRSRYNKTFYSCSE YPDCSVIGNTIDAVITKYTGTPKTPYEKKTTGKKKATTKSSSKTTKTTTKKKKSEGKTPKTPKAGALLTPSPQLALMIGP EPLGRGEATKKVWQYIKDHNLQSPENKKMLLPDDKFAAIIGPEPVDMFQLPKLLNQHLFKSDVSPGSSSASS >Mature_872_residues MKKSLIVVESPAKIKTLQKLLGKGFIFASSLGHVVDLPAKEFGIDIEQDFEPDYQILPDKQEVISQIRKLASSCDIVYLS PDPDREGEAIAWHIANQLPKHTRIQRISFNAITKGAVNEALKHPREIDMALVNAQQARRLLDRIVGYKISPILSRKLQQR SGISAGRVQSVALKLVVDREKAIEAFVPTEYWNIRVFLQDPKTSTTFWAHLYSAEGKKWEKELPKGKTEDEILLIQSEAQ AQHYVALLEDAAYRVTRVEVKEKRRNAAPPFITSTLQQEASRHFRFSSSKTMSVAQTLYEGVELDNEDATGLITYMRTDS VRIDPEALSNVRDYIHNTFGQEYLPKSPNVYTTKKMTQDAHEAIRPTDIHLSPDKLEGKLSDDQLKLYSLIWKRFVASQM NPAIYDTLAMTISTNVKIDLRASGSLLKFKGFLAVYEEKLDDDTTEEENLSLPQLHAQDVLDKEKVSAEQAFTKPLPRFT EASLVKELEKSGIGRPSTYATIMNKIQSREYTIKENQRLRPTELGKIISQFLETNFPRIMDIGFTALMEDELELIADNKK SWKLLLKEFWDQFLPVVTAAEKEAVIPRVLTDITCSACHKGKLVKIWAKNRYFYGCSEYPECDFKTSEEELAFNKDDYAV DTPWNSPCPVCGGDMKVRHGRFGTFLGCLNYPQCRGTISIHKKGEEVEKEETLPCPAVGCSGKILKKRSRYNKTFYSCSE YPDCSVIGNTIDAVITKYTGTPKTPYEKKTTGKKKATTKSSSKTTKTTTKKKKSEGKTPKTPKAGALLTPSPQLALMIGP EPLGRGEATKKVWQYIKDHNLQSPENKKMLLPDDKFAAIIGPEPVDMFQLPKLLNQHLFKSDVSPGSSSASS
Specific function: The reaction catalyzed by topoisomerases leads to the conversion of one topological isomer of DNA to another [H]
COG id: COG0550
COG function: function code L; Topoisomerase IA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Homo sapiens, GI10835218, Length=624, Percent_Identity=24.5192307692308, Blast_Score=125, Evalue=2e-28, Organism=Homo sapiens, GI4507635, Length=772, Percent_Identity=22.6683937823834, Blast_Score=100, Evalue=5e-21, Organism=Escherichia coli, GI1787529, Length=655, Percent_Identity=40.7633587786259, Blast_Score=463, Evalue=1e-131, Organism=Escherichia coli, GI1788061, Length=503, Percent_Identity=25.844930417495, Blast_Score=103, Evalue=5e-23, Organism=Escherichia coli, GI48994931, Length=131, Percent_Identity=38.9312977099237, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI32563869, Length=525, Percent_Identity=24.5714285714286, Blast_Score=111, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17555378, Length=565, Percent_Identity=24.6017699115044, Blast_Score=104, Evalue=3e-22, Organism=Saccharomyces cerevisiae, GI6323263, Length=544, Percent_Identity=24.0808823529412, Blast_Score=113, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6324869, Length=118, Percent_Identity=36.4406779661017, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24585251, Length=718, Percent_Identity=24.6518105849582, Blast_Score=126, Evalue=5e-29, Organism=Drosophila melanogaster, GI24640096, Length=634, Percent_Identity=23.186119873817, Blast_Score=95, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003601 - InterPro: IPR013497 - InterPro: IPR013824 - InterPro: IPR013825 - InterPro: IPR000380 - InterPro: IPR003602 - InterPro: IPR013498 - InterPro: IPR005733 - InterPro: IPR006171 [H]
Pfam domain/function: PF01131 Topoisom_bac; PF01751 Toprim; PF01396 zf-C4_Topoisom [H]
EC number: =5.99.1.2 [H]
Molecular weight: Translated: 98333; Mature: 98333
Theoretical pI: Translated: 8.93; Mature: 8.93
Prosite motif: PS00396 TOPOISOMERASE_I_PROK
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKSLIVVESPAKIKTLQKLLGKGFIFASSLGHVVDLPAKEFGIDIEQDFEPDYQILPDK CCCCEEEEECCHHHHHHHHHHCCCEEEECCCCCEEECCHHHHCCCCCCCCCCCCCCCCCH QEVISQIRKLASSCDIVYLSPDPDREGEAIAWHIANQLPKHTRIQRISFNAITKGAVNEA HHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEHHHHCCCHHHHEEEEHHHHHHHHHHHH LKHPREIDMALVNAQQARRLLDRIVGYKISPILSRKLQQRSGISAGRVQSVALKLVVDRE HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHEECHH KAIEAFVPTEYWNIRVFLQDPKTSTTFWAHLYSAEGKKWEKELPKGKTEDEILLIQSEAQ HHHHHHCCCCEEEEEEEEECCCCCCCCEEEEHHCCCCHHHHHCCCCCCCCCEEEEECCCC AQHYVALLEDAAYRVTRVEVKEKRRNAAPPFITSTLQQEASRHFRFSSSKTMSVAQTLYE HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHH GVELDNEDATGLITYMRTDSVRIDPEALSNVRDYIHNTFGQEYLPKSPNVYTTKKMTQDA CCCCCCCCCCEEEEEEECCCEEECHHHHHHHHHHHHHHHCHHHCCCCCCEEEHHHHHHHH HEAIRPTDIHLSPDKLEGKLSDDQLKLYSLIWKRFVASQMNPAIYDTLAMTISTNVKIDL HHCCCCCCEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCEEEEE RASGSLLKFKGFLAVYEEKLDDDTTEEENLSLPQLHAQDVLDKEKVSAEQAFTKPLPRFT ECCCCEEEHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH EASLVKELEKSGIGRPSTYATIMNKIQSREYTIKENQRLRPTELGKIISQFLETNFPRIM HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEE DIGFTALMEDELELIADNKKSWKLLLKEFWDQFLPVVTAAEKEAVIPRVLTDITCSACHK HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC GKLVKIWAKNRYFYGCSEYPECDFKTSEEELAFNKDDYAVDTPWNSPCPVCGGDMKVRHG CCEEEEEECCEEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCEEECC RFGTFLGCLNYPQCRGTISIHKKGEEVEKEETLPCPAVGCSGKILKKRSRYNKTFYSCSE CCHHHHHHCCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHCCCCC YPDCSVIGNTIDAVITKYTGTPKTPYEKKTTGKKKATTKSSSKTTKTTTKKKKSEGKTPK CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHCCCCCC TPKAGALLTPSPQLALMIGPEPLGRGEATKKVWQYIKDHNLQSPENKKMLLPDDKFAAII CCCCCEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEE GPEPVDMFQLPKLLNQHLFKSDVSPGSSSASS CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MKKSLIVVESPAKIKTLQKLLGKGFIFASSLGHVVDLPAKEFGIDIEQDFEPDYQILPDK CCCCEEEEECCHHHHHHHHHHCCCEEEECCCCCEEECCHHHHCCCCCCCCCCCCCCCCCH QEVISQIRKLASSCDIVYLSPDPDREGEAIAWHIANQLPKHTRIQRISFNAITKGAVNEA HHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEHHHHCCCHHHHEEEEHHHHHHHHHHHH LKHPREIDMALVNAQQARRLLDRIVGYKISPILSRKLQQRSGISAGRVQSVALKLVVDRE HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHEECHH KAIEAFVPTEYWNIRVFLQDPKTSTTFWAHLYSAEGKKWEKELPKGKTEDEILLIQSEAQ HHHHHHCCCCEEEEEEEEECCCCCCCCEEEEHHCCCCHHHHHCCCCCCCCCEEEEECCCC AQHYVALLEDAAYRVTRVEVKEKRRNAAPPFITSTLQQEASRHFRFSSSKTMSVAQTLYE HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHH GVELDNEDATGLITYMRTDSVRIDPEALSNVRDYIHNTFGQEYLPKSPNVYTTKKMTQDA CCCCCCCCCCEEEEEEECCCEEECHHHHHHHHHHHHHHHCHHHCCCCCCEEEHHHHHHHH HEAIRPTDIHLSPDKLEGKLSDDQLKLYSLIWKRFVASQMNPAIYDTLAMTISTNVKIDL HHCCCCCCEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCEEEEE RASGSLLKFKGFLAVYEEKLDDDTTEEENLSLPQLHAQDVLDKEKVSAEQAFTKPLPRFT ECCCCEEEHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH EASLVKELEKSGIGRPSTYATIMNKIQSREYTIKENQRLRPTELGKIISQFLETNFPRIM HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEE DIGFTALMEDELELIADNKKSWKLLLKEFWDQFLPVVTAAEKEAVIPRVLTDITCSACHK HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC GKLVKIWAKNRYFYGCSEYPECDFKTSEEELAFNKDDYAVDTPWNSPCPVCGGDMKVRHG CCEEEEEECCEEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCEEECC RFGTFLGCLNYPQCRGTISIHKKGEEVEKEETLPCPAVGCSGKILKKRSRYNKTFYSCSE CCHHHHHHCCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHCCCCC YPDCSVIGNTIDAVITKYTGTPKTPYEKKTTGKKKATTKSSSKTTKTTTKKKKSEGKTPK CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHCCCCCC TPKAGALLTPSPQLALMIGPEPLGRGEATKKVWQYIKDHNLQSPENKKMLLPDDKFAAII CCCCCEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEE GPEPVDMFQLPKLLNQHLFKSDVSPGSSSASS CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11058132 [H]