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The map label for this gene is nusB [H]

Identifier: 62185353

GI number: 62185353

Start: 853495

End: 853989

Strand: Direct

Name: nusB [H]

Synonym: CAB740

Alternate gene names: 62185353

Gene position: 853495-853989 (Clockwise)

Preceding gene: 62185347

Following gene: 62185354

Centisome position: 74.58

GC content: 39.19

Gene sequence:

>495_bases
ATGTCTACTCTGACTCCTGAAAGCTCCTTAGGGTCTTACGTCAAACTTCCTCGTCCTCTCCCCAAACAAAAAATGCGGGA
GATTGTACTGCAAATGCTTTATGCTTTGGACATGGATCCTATGTCTGAAGAGAGCCTTGTTCCTCTCTTAATGTCGGAGA
CTGCCGTTACTCAAAAACACGCTTCTTCTGCTTTAAATTTTTCAAAAGAAATCCTTGCAAAGTCTTCTGAATTGGATTTA
TTAATTGCTCAAACAGTTAAAAATACCTCTTTTGAGAAGCTGACTTTGATGGAGAAAAACGTTTTACGTTTAACATTGTA
TGAGCACTTTCATGGGCAGCCTATCAATACTGCTATCTTGATTGCGGAAGCCACAAGGCTGGTTAAGAAATTTAGTTATG
TTGAAGCTTGCTCTTTTGTTCATGCAGTTTTAAATGATATTTTTCGTTTAGCAGCGCCGATGACACACCCTGATACTTCT
CTCATGTGTTGTTAG

Upstream 100 bases:

>100_bases
TTTATAAAATATAACCTTAGTGCTTTCTCATTTCGCATCCTTCTATACTAAGTTCCTAATTTAGCAAACTGTAATAAATC
ATTGTTGTTTTGGTGTCATA

Downstream 100 bases:

>100_bases
ACTTAGCGTTATTTTAAACTTATCTGGAATTCTAAATGTGAAAGCCTCTACTGTCATTCGTTTCCCTTTTTCAGTTCGCC
GTAGTGTTTGGTTGAATAAG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MSTLTPESSLGSYVKLPRPLPKQKMREIVLQMLYALDMDPMSEESLVPLLMSETAVTQKHASSALNFSKEILAKSSELDL
LIAQTVKNTSFEKLTLMEKNVLRLTLYEHFHGQPINTAILIAEATRLVKKFSYVEACSFVHAVLNDIFRLAAPMTHPDTS
LMCC

Sequences:

>Translated_164_residues
MSTLTPESSLGSYVKLPRPLPKQKMREIVLQMLYALDMDPMSEESLVPLLMSETAVTQKHASSALNFSKEILAKSSELDL
LIAQTVKNTSFEKLTLMEKNVLRLTLYEHFHGQPINTAILIAEATRLVKKFSYVEACSFVHAVLNDIFRLAAPMTHPDTS
LMCC
>Mature_163_residues
STLTPESSLGSYVKLPRPLPKQKMREIVLQMLYALDMDPMSEESLVPLLMSETAVTQKHASSALNFSKEILAKSSELDLL
IAQTVKNTSFEKLTLMEKNVLRLTLYEHFHGQPINTAILIAEATRLVKKFSYVEACSFVHAVLNDIFRLAAPMTHPDTSL
MCC

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 18388; Mature: 18257

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLTPESSLGSYVKLPRPLPKQKMREIVLQMLYALDMDPMSEESLVPLLMSETAVTQKH
CCCCCCCHHCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
ASSALNFSKEILAKSSELDLLIAQTVKNTSFEKLTLMEKNVLRLTLYEHFHGQPINTAIL
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
IAEATRLVKKFSYVEACSFVHAVLNDIFRLAAPMTHPDTSLMCC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
STLTPESSLGSYVKLPRPLPKQKMREIVLQMLYALDMDPMSEESLVPLLMSETAVTQKH
CCCCCCHHCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
ASSALNFSKEILAKSSELDLLIAQTVKNTSFEKLTLMEKNVLRLTLYEHFHGQPINTAIL
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
IAEATRLVKKFSYVEACSFVHAVLNDIFRLAAPMTHPDTSLMCC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362 [H]