Click here to switch to the map view.

The map label for this gene is yrrC [H]

Identifier: 62185233

GI number: 62185233

Start: 712482

End: 714680

Strand: Direct

Name: yrrC [H]

Synonym: CAB621

Alternate gene names: 62185233

Gene position: 712482-714680 (Clockwise)

Preceding gene: 62185232

Following gene: 62185245

Centisome position: 62.26

GC content: 38.65

Gene sequence:

>2199_bases
ATGGAGAAAATTTCCGGAAAATTAGAAAGCGTGCTTTTTGAAGATCATGATTCAAAGGAAACTGCTGCACGCATGAGAAT
ACCCTACAAGGGTACCATGATCGTTATCAAAGGACAATTCCCCGATTCTTTTTTGCAGCTCGGTATGCAACTACATCTAT
ACGGCAAGTGGTCAGAAAATCCCCACCTAGGGAAGTACTTCCAAGTATATAGTTGTGATTCTCAAGAAATGCGGGATAAT
CGCGGGATAATCAACTACCTTACCTCTAGACTTATCAAAGGCATCGGGCCAAAAATTACAGAAAAAATCATCGAGAAATT
CCGAAATGACACCGCAGATATTCTCGATAATCAACCCGAAAGATTAATAGAAATCCCAGGGATTAGTCAAACGCGCTGTG
ATAGCCTCTGCGAACAACTACGCGAACAAAAAAATCTTCGGACGACATTACTCTTCCTACAACAGTACAACATTGCCATT
CATTATGGTGTAAAAATCTATAAAAAGTATAAAGAGAACTCCATAGAAAAAATATGTGAAGATCCTTTTCTTCTTGCTAG
AGAAATGGAAGGGATCGGATTTAAAACTGCTGATCTTATAGCAACACGTCTTGGTGTACCTTTAAACTCACAAAGCCGAT
TATGTGCTGGCATACAGTATTCTCTGGAAGAACTCCAAGAAGATGGTCATACTTGCTACCCCTTACAAAGTCTGGCTCAG
TTAGTAGAGAAACTACTCAATCAAGATATTCCAGAAAAACTCATACGCATTGAAGAAATCATTTCTCAAGTGTACACCAT
GCAAGAGAAAAATCTTCTTCACATCCAAGAGTTAGAAAACACTCCGTACGTATGGGCAAAGCATATTTACCTAGCAGAAA
AAACAGTAGTTTCTGATTTAAAACGCATTTTATTTTCCTCAAGAAAAATCCGCCCTATAGATAGCAACAAAGCCATTCAA
TGGGTTGAGGAAAATTTAAGTATACATTTAGAGCACAACCAGAAAGAAGCTATTCGTGCGTGTTTTTCGGAAAAAATTCA
CATCATTACTGGAGGACCGGGAACAGGGAAAAGTACGATCACTAAGGCTATACTCAAGATATTTGAGCAAGTGACTTATA
AAATCATTTTAGCGGCTCCTACAGGGAAAGCTGCAAAACGCATGACAGAAATTACTGGAAAACACTCAGTAACTATCCAT
GCTCTGTTACAATACGACTTTAAAACACGGTCTTTCCGTAAGAACTATGAAAACCCTATAGATTGCGATCTGATCATTGT
CGATGAATCTGGAATGATGGATACCTATCTTTTGTATCATTTCTTAAAAGCTCTTCCTGATCATGTGATCGTGATATTCA
TTGGAGATGTACATCAACTTCCGAGTATTGGCCCTGGCAATATCCTCAAAGATATTATCAATTCTAAAAAGATTACCGTA
ACGCAGCTAAATAAGATTTTCCGTCAGGTCCACGACTCCAACATCATTATCAATGCCCATAAAGTCAATGAAGGTGAGTT
CCCTATCTTATATTCTGAATCTGGCCGGAAAGATTTCCTATTTTTCCAAAAAGAAGATCCTCAAGAAGCTGTGGACCATA
TTGTCCATCTAGTGACACAGTTCATCCCTAAGAAATACCATATCTATCCCAAAGATATTCAAATTCTTGCTCCAATGAAA
AAGGGTGTCCTAGGAATTCATAATCTTAATAGAGTCTTAAAATCCGCTTTAAATCCTAAGCAGGCTACTCTCCACGGGAG
ATTTCATTCCTATGCTGTAGGAGATAAGGTCATGCAAATCCGCAACAACTATAATAAAGAAATATTTAATGGAGATATTG
GTTATATCTCTATGATTAACTTTGAAAATAAGCGCGTTGTAGTCAACATGGAAGGCAAGTATGTCGTCTATTCCTTTTCT
GAGCTTGATGATCTGGTTTTAGCCTATGCTACCTCAGTGCATAAATACCAAGGAAGTGAAAGTCCGTGCATTATCCTACC
TATACACACTTCACATTTTATGATGCTGTACAGGAATCTACTCTACACAGCCATCACTAGGGGGAAACAACTCGTCGTCT
TAGTCGGAACGAAAAAAGCTATTGCTATAGCCACAAGAAATGATAAAGTGCAACACCGCTGTACGGGACTCTTACAAGCC
CTTGAACAACTGACTCAACCCCAATCGTCAGGAACATGA

Upstream 100 bases:

>100_bases
AAAAAAGTTACATCCCCAAATTCCATAAAATATAACAGTGGGAATATATCAGTTCATTCTCCTGGGACACCCACCCCTCG
AAATTAGATTTAAGAATTCT

Downstream 100 bases:

>100_bases
CCATGAAATAAACATCTAGTCCACGATCGTGAATAATAACTGAGGGGCTGTTAAGGAAAATACCTCTTCAGAAAAATTCA
ACAACTCTCTATTCCAAAGA

Product: putative exodeoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 732; Mature: 732

Protein sequence:

>732_residues
MEKISGKLESVLFEDHDSKETAARMRIPYKGTMIVIKGQFPDSFLQLGMQLHLYGKWSENPHLGKYFQVYSCDSQEMRDN
RGIINYLTSRLIKGIGPKITEKIIEKFRNDTADILDNQPERLIEIPGISQTRCDSLCEQLREQKNLRTTLLFLQQYNIAI
HYGVKIYKKYKENSIEKICEDPFLLAREMEGIGFKTADLIATRLGVPLNSQSRLCAGIQYSLEELQEDGHTCYPLQSLAQ
LVEKLLNQDIPEKLIRIEEIISQVYTMQEKNLLHIQELENTPYVWAKHIYLAEKTVVSDLKRILFSSRKIRPIDSNKAIQ
WVEENLSIHLEHNQKEAIRACFSEKIHIITGGPGTGKSTITKAILKIFEQVTYKIILAAPTGKAAKRMTEITGKHSVTIH
ALLQYDFKTRSFRKNYENPIDCDLIIVDESGMMDTYLLYHFLKALPDHVIVIFIGDVHQLPSIGPGNILKDIINSKKITV
TQLNKIFRQVHDSNIIINAHKVNEGEFPILYSESGRKDFLFFQKEDPQEAVDHIVHLVTQFIPKKYHIYPKDIQILAPMK
KGVLGIHNLNRVLKSALNPKQATLHGRFHSYAVGDKVMQIRNNYNKEIFNGDIGYISMINFENKRVVVNMEGKYVVYSFS
ELDDLVLAYATSVHKYQGSESPCIILPIHTSHFMMLYRNLLYTAITRGKQLVVLVGTKKAIAIATRNDKVQHRCTGLLQA
LEQLTQPQSSGT

Sequences:

>Translated_732_residues
MEKISGKLESVLFEDHDSKETAARMRIPYKGTMIVIKGQFPDSFLQLGMQLHLYGKWSENPHLGKYFQVYSCDSQEMRDN
RGIINYLTSRLIKGIGPKITEKIIEKFRNDTADILDNQPERLIEIPGISQTRCDSLCEQLREQKNLRTTLLFLQQYNIAI
HYGVKIYKKYKENSIEKICEDPFLLAREMEGIGFKTADLIATRLGVPLNSQSRLCAGIQYSLEELQEDGHTCYPLQSLAQ
LVEKLLNQDIPEKLIRIEEIISQVYTMQEKNLLHIQELENTPYVWAKHIYLAEKTVVSDLKRILFSSRKIRPIDSNKAIQ
WVEENLSIHLEHNQKEAIRACFSEKIHIITGGPGTGKSTITKAILKIFEQVTYKIILAAPTGKAAKRMTEITGKHSVTIH
ALLQYDFKTRSFRKNYENPIDCDLIIVDESGMMDTYLLYHFLKALPDHVIVIFIGDVHQLPSIGPGNILKDIINSKKITV
TQLNKIFRQVHDSNIIINAHKVNEGEFPILYSESGRKDFLFFQKEDPQEAVDHIVHLVTQFIPKKYHIYPKDIQILAPMK
KGVLGIHNLNRVLKSALNPKQATLHGRFHSYAVGDKVMQIRNNYNKEIFNGDIGYISMINFENKRVVVNMEGKYVVYSFS
ELDDLVLAYATSVHKYQGSESPCIILPIHTSHFMMLYRNLLYTAITRGKQLVVLVGTKKAIAIATRNDKVQHRCTGLLQA
LEQLTQPQSSGT
>Mature_732_residues
MEKISGKLESVLFEDHDSKETAARMRIPYKGTMIVIKGQFPDSFLQLGMQLHLYGKWSENPHLGKYFQVYSCDSQEMRDN
RGIINYLTSRLIKGIGPKITEKIIEKFRNDTADILDNQPERLIEIPGISQTRCDSLCEQLREQKNLRTTLLFLQQYNIAI
HYGVKIYKKYKENSIEKICEDPFLLAREMEGIGFKTADLIATRLGVPLNSQSRLCAGIQYSLEELQEDGHTCYPLQSLAQ
LVEKLLNQDIPEKLIRIEEIISQVYTMQEKNLLHIQELENTPYVWAKHIYLAEKTVVSDLKRILFSSRKIRPIDSNKAIQ
WVEENLSIHLEHNQKEAIRACFSEKIHIITGGPGTGKSTITKAILKIFEQVTYKIILAAPTGKAAKRMTEITGKHSVTIH
ALLQYDFKTRSFRKNYENPIDCDLIIVDESGMMDTYLLYHFLKALPDHVIVIFIGDVHQLPSIGPGNILKDIINSKKITV
TQLNKIFRQVHDSNIIINAHKVNEGEFPILYSESGRKDFLFFQKEDPQEAVDHIVHLVTQFIPKKYHIYPKDIQILAPMK
KGVLGIHNLNRVLKSALNPKQATLHGRFHSYAVGDKVMQIRNNYNKEIFNGDIGYISMINFENKRVVVNMEGKYVVYSFS
ELDDLVLAYATSVHKYQGSESPCIILPIHTSHFMMLYRNLLYTAITRGKQLVVLVGTKKAIAIATRNDKVQHRCTGLLQA
LEQLTQPQSSGT

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=569, Percent_Identity=26.713532513181, Blast_Score=135, Evalue=7e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 83858; Mature: 83858

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKISGKLESVLFEDHDSKETAARMRIPYKGTMIVIKGQFPDSFLQLGMQLHLYGKWSEN
CCCHHHHHHHHHHCCCCCHHHHHHEECCCCCEEEEEECCCCHHHHHCCCEEEEEEECCCC
PHLGKYFQVYSCDSQEMRDNRGIINYLTSRLIKGIGPKITEKIIEKFRNDTADILDNQPE
CCCCCEEEEEECCHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHCCCCC
RLIEIPGISQTRCDSLCEQLREQKNLRTTLLFLQQYNIAIHYGVKIYKKYKENSIEKICE
CEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHC
DPFLLAREMEGIGFKTADLIATRLGVPLNSQSRLCAGIQYSLEELQEDGHTCYPLQSLAQ
CHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEECHHHHHH
LVEKLLNQDIPEKLIRIEEIISQVYTMQEKNLLHIQELENTPYVWAKHIYLAEKTVVSDL
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHCCCCCCEEEHEEEHHHHHHHHHH
KRILFSSRKIRPIDSNKAIQWVEENLSIHLEHNQKEAIRACFSEKIHIITGGPGTGKSTI
HHHHHCCCCCCCCCCCCHHHEEECCCEEEEECCHHHHHHHHHCCCEEEEECCCCCCHHHH
TKAILKIFEQVTYKIILAAPTGKAAKRMTEITGKHSVTIHALLQYDFKTRSFRKNYENPI
HHHHHHHHHHCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHCCCCCC
DCDLIIVDESGMMDTYLLYHFLKALPDHVIVIFIGDVHQLPSIGPGNILKDIINSKKITV
CEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCHHHHHHHHCCCCEEH
TQLNKIFRQVHDSNIIINAHKVNEGEFPILYSESGRKDFLFFQKEDPQEAVDHIVHLVTQ
HHHHHHHHHHCCCCEEEEEEECCCCCCCEEECCCCCCEEEEEECCCHHHHHHHHHHHHHH
FIPKKYHIYPKDIQILAPMKKGVLGIHNLNRVLKSALNPKQATLHGRFHSYAVGDKVMQI
HCCCCEEECCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHH
RNNYNKEIFNGDIGYISMINFENKRVVVNMEGKYVVYSFSELDDLVLAYATSVHKYQGSE
HHCCCCCCCCCCCCEEEEEEECCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHCCCCC
SPCIILPIHTSHFMMLYRNLLYTAITRGKQLVVLVGTKKAIAIATRNDKVQHRCTGLLQA
CCEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEECCCHHHHHHHHHHHH
LEQLTQPQSSGT
HHHHHCCCCCCC
>Mature Secondary Structure
MEKISGKLESVLFEDHDSKETAARMRIPYKGTMIVIKGQFPDSFLQLGMQLHLYGKWSEN
CCCHHHHHHHHHHCCCCCHHHHHHEECCCCCEEEEEECCCCHHHHHCCCEEEEEEECCCC
PHLGKYFQVYSCDSQEMRDNRGIINYLTSRLIKGIGPKITEKIIEKFRNDTADILDNQPE
CCCCCEEEEEECCHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHCCCCC
RLIEIPGISQTRCDSLCEQLREQKNLRTTLLFLQQYNIAIHYGVKIYKKYKENSIEKICE
CEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHC
DPFLLAREMEGIGFKTADLIATRLGVPLNSQSRLCAGIQYSLEELQEDGHTCYPLQSLAQ
CHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEECHHHHHH
LVEKLLNQDIPEKLIRIEEIISQVYTMQEKNLLHIQELENTPYVWAKHIYLAEKTVVSDL
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHCCCCCCEEEHEEEHHHHHHHHHH
KRILFSSRKIRPIDSNKAIQWVEENLSIHLEHNQKEAIRACFSEKIHIITGGPGTGKSTI
HHHHHCCCCCCCCCCCCHHHEEECCCEEEEECCHHHHHHHHHCCCEEEEECCCCCCHHHH
TKAILKIFEQVTYKIILAAPTGKAAKRMTEITGKHSVTIHALLQYDFKTRSFRKNYENPI
HHHHHHHHHHCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHCCCCCC
DCDLIIVDESGMMDTYLLYHFLKALPDHVIVIFIGDVHQLPSIGPGNILKDIINSKKITV
CEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCHHHHHHHHCCCCEEH
TQLNKIFRQVHDSNIIINAHKVNEGEFPILYSESGRKDFLFFQKEDPQEAVDHIVHLVTQ
HHHHHHHHHHCCCCEEEEEEECCCCCCCEEECCCCCCEEEEEECCCHHHHHHHHHHHHHH
FIPKKYHIYPKDIQILAPMKKGVLGIHNLNRVLKSALNPKQATLHGRFHSYAVGDKVMQI
HCCCCEEECCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHH
RNNYNKEIFNGDIGYISMINFENKRVVVNMEGKYVVYSFSELDDLVLAYATSVHKYQGSE
HHCCCCCCCCCCCCEEEEEEECCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHCCCCC
SPCIILPIHTSHFMMLYRNLLYTAITRGKQLVVLVGTKKAIAIATRNDKVQHRCTGLLQA
CCEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEECCCHHHHHHHHHHHH
LEQLTQPQSSGT
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]