| Definition | Chlamydophila abortus S26/3, complete genome. |
|---|---|
| Accession | NC_004552 |
| Length | 1,144,377 |
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The map label for this gene is oppD [H]
Identifier: 62185193
GI number: 62185193
Start: 654951
End: 655817
Strand: Direct
Name: oppD [H]
Synonym: CAB577
Alternate gene names: 62185193
Gene position: 654951-655817 (Clockwise)
Preceding gene: 62185192
Following gene: 62185194
Centisome position: 57.23
GC content: 38.41
Gene sequence:
>867_bases ATGGCTGATACCTTACTCAACATACAAAATCTTACGATAGCCTCAAACAATCCACGTAGATTGCTCATAGATAATCTCAG CCTTTCCATTAAAAAACGGCATAGCCTAGCGTTAGTTGGTGAAAATGGCTCAGGAAAAACAACAATTACTAAAGCGATTC TAGGTTTCCTTCCAGATAACTGTGAAATCTTAGAAGGAAATATCTTCTTTGAAAATACGAATTTAAAAACCCTGTCCTAT AAAAAATTTCAAAAGATCCGCGGGAAGAAAATAGCGACAGTACTGCAAAATGCCCTTGGATCTCTTACGCCATCTATGCG TATAGGAGCACAAATTGTAGAAACCTTACGACAACATAATCCCATCACAAAAAAAGAAGCGTATGCAAAAGCTTTAGAAT TACTCACAAGCGTATGTATCCCGAATCCTGAACGATGTTTTCACCTTTATCCTTTTGAATTAAGTGGAGGTATGCGACAA CGTACCGTAATTGCGATATCTCTTGCGAGCTCTCCTGAACTTATTCTTGCTGATGAGCCAACAACAGCTCTGGATTCTGT GTCTCAGGCTCAGATATTACGTATATTGCGTAAAGTGCATAAAGAACATCATACCGCCATGTTGTTAGTTACGCATAATC TCGCTTTAGTCACAGAACTTTGTGATGACATCGCCATTATTAAAGATGGCCAACTTGTAGAAACAGGCAGTGTAAAAGAG ATCTTCTCTTCTCCACAGCACCCTTATACAAAACGTCTTCTGAAAGCTGTATCAAAAATTCCCCTAACTGCTTGCTCTTC GCCTATTTTAAAGGCAAAGCTCGAAAATTTAAGAAATACAGATACTCCACAGACAATATATGACTAA
Upstream 100 bases:
>100_bases TGGTTATTTTTCTTTCCCTCATTTTTCATGATTACACTCTCGATAAGCTTTAACCTCATCGGGGAAGGAGCAAAAGCACT ATTCATCGAGGAAAATTCTC
Downstream 100 bases:
>100_bases CTTAATTACTATAAAGAATCTATCCATTGCCATTAGGAAGCAAGTCATTCTCAATGACATTAACCTAGACCTCAAAAAAG GAGAATGTCTGACTGTTGTC
Product: putative peptide ABC transporter
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MADTLLNIQNLTIASNNPRRLLIDNLSLSIKKRHSLALVGENGSGKTTITKAILGFLPDNCEILEGNIFFENTNLKTLSY KKFQKIRGKKIATVLQNALGSLTPSMRIGAQIVETLRQHNPITKKEAYAKALELLTSVCIPNPERCFHLYPFELSGGMRQ RTVIAISLASSPELILADEPTTALDSVSQAQILRILRKVHKEHHTAMLLVTHNLALVTELCDDIAIIKDGQLVETGSVKE IFSSPQHPYTKRLLKAVSKIPLTACSSPILKAKLENLRNTDTPQTIYD
Sequences:
>Translated_288_residues MADTLLNIQNLTIASNNPRRLLIDNLSLSIKKRHSLALVGENGSGKTTITKAILGFLPDNCEILEGNIFFENTNLKTLSY KKFQKIRGKKIATVLQNALGSLTPSMRIGAQIVETLRQHNPITKKEAYAKALELLTSVCIPNPERCFHLYPFELSGGMRQ RTVIAISLASSPELILADEPTTALDSVSQAQILRILRKVHKEHHTAMLLVTHNLALVTELCDDIAIIKDGQLVETGSVKE IFSSPQHPYTKRLLKAVSKIPLTACSSPILKAKLENLRNTDTPQTIYD >Mature_287_residues ADTLLNIQNLTIASNNPRRLLIDNLSLSIKKRHSLALVGENGSGKTTITKAILGFLPDNCEILEGNIFFENTNLKTLSYK KFQKIRGKKIATVLQNALGSLTPSMRIGAQIVETLRQHNPITKKEAYAKALELLTSVCIPNPERCFHLYPFELSGGMRQR TVIAISLASSPELILADEPTTALDSVSQAQILRILRKVHKEHHTAMLLVTHNLALVTELCDDIAIIKDGQLVETGSVKEI FSSPQHPYTKRLLKAVSKIPLTACSSPILKAKLENLRNTDTPQTIYD
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI255708477, Length=245, Percent_Identity=26.530612244898, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI110832837, Length=235, Percent_Identity=27.6595744680851, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI11967969, Length=252, Percent_Identity=27.3809523809524, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI110832835, Length=235, Percent_Identity=27.6595744680851, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI110832839, Length=235, Percent_Identity=27.6595744680851, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI21536376, Length=239, Percent_Identity=24.2677824267782, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI42741659, Length=223, Percent_Identity=28.2511210762332, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI4505771, Length=224, Percent_Identity=29.4642857142857, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9961252, Length=224, Percent_Identity=29.4642857142857, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9961250, Length=224, Percent_Identity=29.4642857142857, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI215820660, Length=234, Percent_Identity=24.7863247863248, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI20143975, Length=234, Percent_Identity=24.7863247863248, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI48994883, Length=261, Percent_Identity=36.3984674329502, Blast_Score=201, Evalue=6e-53, Organism=Escherichia coli, GI1787759, Length=258, Percent_Identity=37.5968992248062, Blast_Score=198, Evalue=4e-52, Organism=Escherichia coli, GI1789963, Length=260, Percent_Identity=37.3076923076923, Blast_Score=192, Evalue=2e-50, Organism=Escherichia coli, GI145693107, Length=267, Percent_Identity=35.9550561797753, Blast_Score=190, Evalue=8e-50, Organism=Escherichia coli, GI1788506, Length=279, Percent_Identity=38.3512544802867, Blast_Score=187, Evalue=6e-49, Organism=Escherichia coli, GI1787548, Length=260, Percent_Identity=33.8461538461538, Blast_Score=165, Evalue=3e-42, Organism=Escherichia coli, GI1789890, Length=251, Percent_Identity=35.0597609561753, Blast_Score=159, Evalue=3e-40, Organism=Escherichia coli, GI1789962, Length=246, Percent_Identity=31.7073170731707, Blast_Score=144, Evalue=9e-36, Organism=Escherichia coli, GI1787500, Length=237, Percent_Identity=32.4894514767932, Blast_Score=143, Evalue=1e-35, Organism=Escherichia coli, GI1787758, Length=295, Percent_Identity=31.864406779661, Blast_Score=134, Evalue=9e-33, Organism=Escherichia coli, GI48994997, Length=257, Percent_Identity=34.2412451361868, Blast_Score=124, Evalue=7e-30, Organism=Escherichia coli, GI1789891, Length=250, Percent_Identity=31.2, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1788225, Length=239, Percent_Identity=33.4728033472803, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI1786398, Length=255, Percent_Identity=29.4117647058824, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1789032, Length=238, Percent_Identity=29.8319327731092, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI1787547, Length=271, Percent_Identity=26.9372693726937, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI1789586, Length=259, Percent_Identity=25.4826254826255, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1788644, Length=135, Percent_Identity=37.037037037037, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1788761, Length=259, Percent_Identity=25.8687258687259, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI87081791, Length=287, Percent_Identity=27.8745644599303, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87081834, Length=214, Percent_Identity=32.7102803738318, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1787029, Length=237, Percent_Identity=28.6919831223629, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787712, Length=232, Percent_Identity=28.8793103448276, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1786703, Length=215, Percent_Identity=30.6976744186047, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=29.7777777777778, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI87081709, Length=242, Percent_Identity=25.6198347107438, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1788450, Length=232, Percent_Identity=24.1379310344828, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1786345, Length=243, Percent_Identity=26.7489711934156, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1789672, Length=262, Percent_Identity=26.7175572519084, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787105, Length=214, Percent_Identity=30.8411214953271, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1790162, Length=234, Percent_Identity=26.9230769230769, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787370, Length=238, Percent_Identity=26.0504201680672, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=27.8846153846154, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790534, Length=227, Percent_Identity=29.0748898678414, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790739, Length=241, Percent_Identity=26.1410788381743, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI87082267, Length=246, Percent_Identity=26.4227642276423, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1786872, Length=222, Percent_Identity=28.8288288288288, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786803, Length=228, Percent_Identity=25.8771929824561, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1786654, Length=242, Percent_Identity=24.7933884297521, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789593, Length=248, Percent_Identity=26.2096774193548, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI48995001, Length=235, Percent_Identity=25.9574468085106, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1790467, Length=275, Percent_Identity=22.5454545454545, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789864, Length=259, Percent_Identity=23.1660231660232, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1790190, Length=210, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789991, Length=237, Percent_Identity=27.8481012658228, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1787041, Length=244, Percent_Identity=25.8196721311475, Blast_Score=68, Evalue=9e-13, Organism=Escherichia coli, GI1786253, Length=225, Percent_Identity=23.1111111111111, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787164, Length=213, Percent_Identity=25.8215962441315, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786319, Length=174, Percent_Identity=30.4597701149425, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI48994943, Length=221, Percent_Identity=22.6244343891403, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI87081782, Length=256, Percent_Identity=24.609375, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790525, Length=216, Percent_Identity=27.3148148148148, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI1790544, Length=254, Percent_Identity=25.1968503937008, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI25146777, Length=251, Percent_Identity=27.8884462151394, Blast_Score=82, Evalue=5e-16, Organism=Caenorhabditis elegans, GI193211015, Length=227, Percent_Identity=26.431718061674, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71996809, Length=227, Percent_Identity=26.431718061674, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193211017, Length=227, Percent_Identity=26.431718061674, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17533971, Length=238, Percent_Identity=27.7310924369748, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193208177, Length=247, Percent_Identity=27.1255060728745, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71992285, Length=249, Percent_Identity=28.1124497991968, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17543740, Length=243, Percent_Identity=27.1604938271605, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115534520, Length=253, Percent_Identity=25.6916996047431, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17558664, Length=222, Percent_Identity=27.9279279279279, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI115533592, Length=239, Percent_Identity=26.3598326359833, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17541710, Length=227, Percent_Identity=26.431718061674, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193202349, Length=225, Percent_Identity=24.8888888888889, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI212646699, Length=227, Percent_Identity=25.1101321585903, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322640, Length=247, Percent_Identity=27.9352226720648, Blast_Score=72, Evalue=9e-14, Organism=Saccharomyces cerevisiae, GI6323217, Length=237, Percent_Identity=25.7383966244726, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6324985, Length=244, Percent_Identity=26.2295081967213, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI85726357, Length=237, Percent_Identity=29.535864978903, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI24641565, Length=250, Percent_Identity=28, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI19920532, Length=223, Percent_Identity=26.0089686098655, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24580930, Length=223, Percent_Identity=26.0089686098655, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI17136662, Length=227, Percent_Identity=28.6343612334802, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI28574533, Length=234, Percent_Identity=23.0769230769231, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI17136592, Length=228, Percent_Identity=25, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24648314, Length=231, Percent_Identity=24.6753246753247, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI85816269, Length=220, Percent_Identity=25.9090909090909, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI24580553, Length=220, Percent_Identity=25.9090909090909, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI85724864, Length=209, Percent_Identity=25.3588516746411, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI24580555, Length=209, Percent_Identity=25.3588516746411, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 31868; Mature: 31736
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADTLLNIQNLTIASNNPRRLLIDNLSLSIKKRHSLALVGENGSGKTTITKAILGFLPDN CCCCEEEEEEEEEECCCCCEEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHHHCCCC CEILEGNIFFENTNLKTLSYKKFQKIRGKKIATVLQNALGSLTPSMRIGAQIVETLRQHN CEEEECEEEEECCCCEEEHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC PITKKEAYAKALELLTSVCIPNPERCFHLYPFELSGGMRQRTVIAISLASSPELILADEP CCCHHHHHHHHHHHHHHHHCCCHHHEEEEEEEECCCCCCEEEEEEEEECCCCCEEEECCC TTALDSVSQAQILRILRKVHKEHHTAMLLVTHNLALVTELCDDIAIIKDGQLVETGSVKE CHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHEEECCCCEEECCCHHH IFSSPQHPYTKRLLKAVSKIPLTACSSPILKAKLENLRNTDTPQTIYD HHCCCCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure ADTLLNIQNLTIASNNPRRLLIDNLSLSIKKRHSLALVGENGSGKTTITKAILGFLPDN CCCEEEEEEEEEECCCCCEEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHHHCCCC CEILEGNIFFENTNLKTLSYKKFQKIRGKKIATVLQNALGSLTPSMRIGAQIVETLRQHN CEEEECEEEEECCCCEEEHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC PITKKEAYAKALELLTSVCIPNPERCFHLYPFELSGGMRQRTVIAISLASSPELILADEP CCCHHHHHHHHHHHHHHHHCCCHHHEEEEEEEECCCCCCEEEEEEEEECCCCCEEEECCC TTALDSVSQAQILRILRKVHKEHHTAMLLVTHNLALVTELCDDIAIIKDGQLVETGSVKE CHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHEEECCCCEEECCCHHH IFSSPQHPYTKRLLKAVSKIPLTACSSPILKAKLENLRNTDTPQTIYD HHCCCCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]