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The map label for this gene is sodB [H]

Identifier: 59711528

GI number: 59711528

Start: 1016766

End: 1017350

Strand: Reverse

Name: sodB [H]

Synonym: VF_0921

Alternate gene names: 59711528

Gene position: 1017350-1016766 (Counterclockwise)

Preceding gene: 59711530

Following gene: 59711527

Centisome position: 35.11

GC content: 41.71

Gene sequence:

>585_bases
ATGTCATTTGAATTACCAGCTCTACCGTATGCAAAAGATGCACTAGAACCACATATCTCAGCAGAAACACTGGATTTCCA
CCACGGTAAACACCACAACACATACGTTGTTAAACTAAACGGTCTTATCCCTGGTACTGAGTTTGAAGGTAAAACACTAG
AAGAGATCATTAAAACTTCTACTGGTGGTGTTTTCAATAACGCAGCACAAATCTGGAACCACACGTTCTACTGGCACTGT
TTAGCTCCAAACGCTGGTGGCGAACCAACTGGTGCTGTAGCAGAAGCTATCAACGCTGCATTCGGTTCTTTTGAAGAATT
TAAAGCTCAATTCACAGATTCAGCAATCAATAACTTTGGTTCTTCTTGGACTTGGTTAGTGAAAAAAGCGGACGGTTCTC
TAGAAATCGTTAACACGTCTAACGCAGCAACACCACTAACAGAAGAAGGTACAACACCACTTCTAACAGTTGACCTGTGG
GAACACGCTTACTACATCGATTTCCGTAATGTTCGTCCTGATTACATGGGTGCATTCTGGAACCTTGTAAACTGGTCTTT
CGTAGAAGAAAACCTAGCAAAATAA

Upstream 100 bases:

>100_bases
CTAGAATCAAAGCGAAGTCAGATAAGCTCTAATTATAATTGAGCACATATTTTTGGAAAATTAATGAGGCATAGACCTCT
TTTAAATGGAGACACGAGCG

Downstream 100 bases:

>100_bases
TTTTCGAATTATAAATAGACGCATCTTGCGGCTAAACACTTCAAAGGTCAGTTTTTATACTGGCCTTTTTTATTACCTTC
CATTGCGGTAACTCTTTGCC

Product: superoxide dismutase, Fe

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MSFELPALPYAKDALEPHISAETLDFHHGKHHNTYVVKLNGLIPGTEFEGKTLEEIIKTSTGGVFNNAAQIWNHTFYWHC
LAPNAGGEPTGAVAEAINAAFGSFEEFKAQFTDSAINNFGSSWTWLVKKADGSLEIVNTSNAATPLTEEGTTPLLTVDLW
EHAYYIDFRNVRPDYMGAFWNLVNWSFVEENLAK

Sequences:

>Translated_194_residues
MSFELPALPYAKDALEPHISAETLDFHHGKHHNTYVVKLNGLIPGTEFEGKTLEEIIKTSTGGVFNNAAQIWNHTFYWHC
LAPNAGGEPTGAVAEAINAAFGSFEEFKAQFTDSAINNFGSSWTWLVKKADGSLEIVNTSNAATPLTEEGTTPLLTVDLW
EHAYYIDFRNVRPDYMGAFWNLVNWSFVEENLAK
>Mature_193_residues
SFELPALPYAKDALEPHISAETLDFHHGKHHNTYVVKLNGLIPGTEFEGKTLEEIIKTSTGGVFNNAAQIWNHTFYWHCL
APNAGGEPTGAVAEAINAAFGSFEEFKAQFTDSAINNFGSSWTWLVKKADGSLEIVNTSNAATPLTEEGTTPLLTVDLWE
HAYYIDFRNVRPDYMGAFWNLVNWSFVEENLAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=196, Percent_Identity=42.3469387755102, Blast_Score=156, Evalue=1e-38,
Organism=Homo sapiens, GI67782305, Length=196, Percent_Identity=42.3469387755102, Blast_Score=156, Evalue=1e-38,
Organism=Homo sapiens, GI67782309, Length=188, Percent_Identity=37.2340425531915, Blast_Score=121, Evalue=4e-28,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=76.1658031088083, Blast_Score=311, Evalue=2e-86,
Organism=Escherichia coli, GI1790342, Length=198, Percent_Identity=42.4242424242424, Blast_Score=155, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17506561, Length=193, Percent_Identity=39.3782383419689, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17569479, Length=192, Percent_Identity=39.5833333333333, Blast_Score=133, Evalue=7e-32,
Organism=Saccharomyces cerevisiae, GI6321796, Length=206, Percent_Identity=35.9223300970874, Blast_Score=111, Evalue=7e-26,
Organism=Drosophila melanogaster, GI17136812, Length=188, Percent_Identity=38.2978723404255, Blast_Score=131, Evalue=2e-31,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21585; Mature: 21454

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFELPALPYAKDALEPHISAETLDFHHGKHHNTYVVKLNGLIPGTEFEGKTLEEIIKTS
CCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHC
TGGVFNNAAQIWNHTFYWHCLAPNAGGEPTGAVAEAINAAFGSFEEFKAQFTDSAINNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
SSWTWLVKKADGSLEIVNTSNAATPLTEEGTTPLLTVDLWEHAYYIDFRNVRPDYMGAFW
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHH
NLVNWSFVEENLAK
HHHHHHHHHHHHCC
>Mature Secondary Structure 
SFELPALPYAKDALEPHISAETLDFHHGKHHNTYVVKLNGLIPGTEFEGKTLEEIIKTS
CCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHC
TGGVFNNAAQIWNHTFYWHCLAPNAGGEPTGAVAEAINAAFGSFEEFKAQFTDSAINNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
SSWTWLVKKADGSLEIVNTSNAATPLTEEGTTPLLTVDLWEHAYYIDFRNVRPDYMGAFW
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHH
NLVNWSFVEENLAK
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3542995 [H]