Click here to switch to the map view.

The map label for this gene is ybjE [H]

Identifier: 59711501

GI number: 59711501

Start: 983713

End: 984612

Strand: Reverse

Name: ybjE [H]

Synonym: VF_0894

Alternate gene names: 59711501

Gene position: 984612-983713 (Counterclockwise)

Preceding gene: 59711502

Following gene: 59711500

Centisome position: 33.98

GC content: 40.33

Gene sequence:

>900_bases
ATGTTTTCGGGAATGTTATTCGTTTTTTTACCACTGCTTTTAGGCTATTTAATCCCTCTTCATACGAAGAAGCCGCTTCA
ACATATTAATGCCGCAACAAGTCACCTAGTTACCGTTATCCTAGCACTTATGGGCTTAAGTCTTGCCGCTCTGGATAATC
TTGCTCAAAACCTCAATCAAATCTTAACGATTACGGTTACTTTCTTTCTCGCAATTAGCGTATGTAACTTAGCTATTCTT
CCTATTATGGATAAGCTCTTTCCGCTAAATTCGGAAGGGAATAAAAACTCGCTTCCACTATTTAAAATGATCCTAGAATC
GGCAAAGCTGCTCTTAGCGGTTGCGGGAGGTCTAGTATTTGGCTTACTTTCTGGTATCGATTTAAGTTGGGTTGAGCAAG
CCAGTGAGATAATCCTATTACTTCTATTATTCTTAATTGGTATTCAATTACGTAACAGTGGCCTTACACTTCGCCAGATC
CTATTAAATAAACACGGTATTATTATTGCCGCAGTTATTATGTCTACCTCTTTTGTTGGTGGCATCATTGGTGCTCTTAT
TCTTGATATCCCATTACCACACGGCTTAGCAATGGCCTCTGGTTTTGGATGGTATTCACTTGCTGGCATCTTAATGGGTG
ATGCTTTAGGTCCAGTATATGGTGGCGCCGCTTTCTTAAATGAACTTTTCCGTGAGTTGGTCGCTCTACTACTAATCCCA
ACCTTAATTCATCGCTATCCAGTCACCTCTATTGGTTACGCTGGAGCAACAGCAATGGATTTCACACTTCCTGTTATTCA
AAATTGTGGCGGGATTCGCTGTGTTCCTATTGCTATTGTCAGTGGTTTTATACTGAGTCTCTCAGTTCCTTTTTTGATGC
TGTTCTTCGTTTCTCTTTAG

Upstream 100 bases:

>100_bases
TGGTTTGTAATTAAATTACAACAAATTGATTAACATTATATTGCCGAATTTGAAAAGCCTTGATATTCTCGGGGCTTCTT
CAAAAGTTGGGCTTATTATT

Downstream 100 bases:

>100_bases
GTAATCGCAGCAGAAAAAAGTTATTCGTATTAGATTAAGTGGGAAACATCACACTGTGAATCGTTTCAATTGCATTTAGT
TACACTCTATTTACAATCAC

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MFSGMLFVFLPLLLGYLIPLHTKKPLQHINAATSHLVTVILALMGLSLAALDNLAQNLNQILTITVTFFLAISVCNLAIL
PIMDKLFPLNSEGNKNSLPLFKMILESAKLLLAVAGGLVFGLLSGIDLSWVEQASEIILLLLLFLIGIQLRNSGLTLRQI
LLNKHGIIIAAVIMSTSFVGGIIGALILDIPLPHGLAMASGFGWYSLAGILMGDALGPVYGGAAFLNELFRELVALLLIP
TLIHRYPVTSIGYAGATAMDFTLPVIQNCGGIRCVPIAIVSGFILSLSVPFLMLFFVSL

Sequences:

>Translated_299_residues
MFSGMLFVFLPLLLGYLIPLHTKKPLQHINAATSHLVTVILALMGLSLAALDNLAQNLNQILTITVTFFLAISVCNLAIL
PIMDKLFPLNSEGNKNSLPLFKMILESAKLLLAVAGGLVFGLLSGIDLSWVEQASEIILLLLLFLIGIQLRNSGLTLRQI
LLNKHGIIIAAVIMSTSFVGGIIGALILDIPLPHGLAMASGFGWYSLAGILMGDALGPVYGGAAFLNELFRELVALLLIP
TLIHRYPVTSIGYAGATAMDFTLPVIQNCGGIRCVPIAIVSGFILSLSVPFLMLFFVSL
>Mature_299_residues
MFSGMLFVFLPLLLGYLIPLHTKKPLQHINAATSHLVTVILALMGLSLAALDNLAQNLNQILTITVTFFLAISVCNLAIL
PIMDKLFPLNSEGNKNSLPLFKMILESAKLLLAVAGGLVFGLLSGIDLSWVEQASEIILLLLLFLIGIQLRNSGLTLRQI
LLNKHGIIIAAVIMSTSFVGGIIGALILDIPLPHGLAMASGFGWYSLAGILMGDALGPVYGGAAFLNELFRELVALLLIP
TLIHRYPVTSIGYAGATAMDFTLPVIQNCGGIRCVPIAIVSGFILSLSVPFLMLFFVSL

Specific function: Unknown

COG id: COG2431

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1452 [H]

Homologues:

Organism=Escherichia coli, GI87081795, Length=297, Percent_Identity=51.5151515151515, Blast_Score=267, Evalue=5e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005642
- ProDom:   PD022789 [H]

Pfam domain/function: PF03956 DUF340 [H]

EC number: NA

Molecular weight: Translated: 31947; Mature: 31947

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSGMLFVFLPLLLGYLIPLHTKKPLQHINAATSHLVTVILALMGLSLAALDNLAQNLNQ
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILTITVTFFLAISVCNLAILPIMDKLFPLNSEGNKNSLPLFKMILESAKLLLAVAGGLVF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GLLSGIDLSWVEQASEIILLLLLFLIGIQLRNSGLTLRQILLNKHGIIIAAVIMSTSFVG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
GIIGALILDIPLPHGLAMASGFGWYSLAGILMGDALGPVYGGAAFLNELFRELVALLLIP
HHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLIHRYPVTSIGYAGATAMDFTLPVIQNCGGIRCVPIAIVSGFILSLSVPFLMLFFVSL
HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MFSGMLFVFLPLLLGYLIPLHTKKPLQHINAATSHLVTVILALMGLSLAALDNLAQNLNQ
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILTITVTFFLAISVCNLAILPIMDKLFPLNSEGNKNSLPLFKMILESAKLLLAVAGGLVF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GLLSGIDLSWVEQASEIILLLLLFLIGIQLRNSGLTLRQILLNKHGIIIAAVIMSTSFVG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
GIIGALILDIPLPHGLAMASGFGWYSLAGILMGDALGPVYGGAAFLNELFRELVALLLIP
HHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLIHRYPVTSIGYAGATAMDFTLPVIQNCGGIRCVPIAIVSGFILSLSVPFLMLFFVSL
HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]