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The map label for this gene is secD [H]

Identifier: 59711482

GI number: 59711482

Start: 959369

End: 961192

Strand: Reverse

Name: secD [H]

Synonym: VF_0875

Alternate gene names: 59711482

Gene position: 961192-959369 (Counterclockwise)

Preceding gene: 59711483

Following gene: 59711481

Centisome position: 33.17

GC content: 43.91

Gene sequence:

>1824_bases
ATGCAAAGAAAACAACCAATACAGCGACTGAACCATTATTCTAAATGGAAATACATCGTACTTATTACGACCCTTGTTAT
TCTATTATTGAGTGCGATCCCGACTTGGTATGGTGAAGATGCCGCCGTGCAAATCACCAACAAAGATGGACACATTCCAT
CGATTGTATCACTACAAAACACCTTGACTGAGCAAGGCATTAACGTAAAACGCATCGAACAAAAAGGCGATAAAACCATC
GTTATTTTGAAAGATGAAGCACAACAAGTTGCCGCTAAAGATGTGCTTGGTTCAGTGATTGATGAAAGCCAAAAAGGCAC
CACACTAGCATTGTCACTTGCACCTGCTGCACCAGCTTGGCTACAAAACATGGGCTTTGAACCAATCAAACTCGGTCTTG
ATTTACGTGGCGGTGTGCAATTCTTACTGGATGTGGACGTAAACCAAGTTTACCAAGCACAACGTAACGAATTAGCTGAC
TCGCTAAAACAAGAGTTACGTGAAGAACGTATTCGCTCAGTTCGCTTACAAAAAGTAGACAGTGATACGCTAGTGGTTCA
CTTACCTTCAGAAGAAGCAAGCCACGCAGCTCGTCAATTCATTCATAAAAACTACCCTACTTGGCAAATCACCAATGATG
ACGGTTTTGATCTTAAATTAACGCTAAAAGAAGATGAAAAAATTGCCGTACGTAACCTAACAGTACAGCAAAACCTTCAA
ACCATGCGTAGCCGTATTGAAGAGTTAGGTATTACCGAAGCACTGGTTCAGCGTCAAGGTGAAAACCGCATTCGTATCGA
GCTTCCAGGTGTTCAAGATCCAGCAGCGGCGAAAAACGTTATCGGTGCGACAGCAAGTCTTGCTTTCTACGCAGTAAAAG
AACAAGGCACTGGCAGCACAATGGTTATTCCTGACCAAAACGGCCAACCAGTTCGTGTAGGCAGAAAACCAGTACTAACG
GGTGATCACATTGTTGATGCACGTGCGAGTCTTGGTGAAATGGGCATGGCAGAAGTAAACATTGTTCTTGATAGTTCAGG
CGGCAAAATCATGTCTGAGTTTTCTCGTCACAATGTGGGCAAGCCAATGGCAACCTCATACAACGAATACAGCCGTGATA
GCGCAGGTAACACAGAGCAAAGTAACCAAATCATCAGTGTTGCGACGATTCAAAGTCAGTTAGGTAGCCGCTTTAGAATC
ACAGGTTCTGGTTCTCTTCAAGAATCTCAAGAGCTTGCTCTACTTCTACGTGCTGGTTCATTAACTGCGCCTGTAACCAT
CGTTGAAGAACGTACTATTGGTCCAACGCTAGGTGCTGAAAACATCCAAAACGGTTTTGCGGCTTTAGGTCTTGGTCTTG
GTTTAACGCTGCTATTTATGGCGGTGTGGTACCGTCGCTTAGGCTGGGTTGCCAACATTGCACTTATTGGCAACATGGTA
ATGCTATTTGGTCTGCTTGCTCTTATTCCGGGTGCTGTTCTTACGCTTCCGGGGATTGCAGGTCTTGTACTGACCGTAGG
TATGGCGGTTGATACCAACGTACTGATATTTGAACGTATTAAAGATAAACAGAAAGAAGGTCGAACATTGGCTCAAGCCA
TTGATAGAGGTTTTAGTAGTGCATTTGGTACCATTTTTGATGCCAACTTCACCACCATGATTACCGCAGTGGTTCTATAC
ACCATAGGTAATGGCCCTATCCAAGGCTTTGCATTAACACTGGGCTTAGGTCTATTAACCAGTATGTTCACCGGCATCTT
CGCTTCACGTGCCATTATCAATTTAGTTTGGGGTCGTGATTCTCGTCATGATGTTAGGGTTTAA

Upstream 100 bases:

>100_bases
TTAGTTATTTCTGTACTTATACCAATCTATATAAGCATTTGATCTAGCTAGATTTGTGACTTTTTCGCATACGCATTGTC
GTATGTGAGGTGAAATTATT

Downstream 100 bases:

>100_bases
GTTATGTTTATAAATATGAAAAATGCAACAAAATGGCGTCACATGACGAGTGTGGTTTCGGTATGTTTAATGATTTTTGC
ATTAACGATGATCGCAACCA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 607; Mature: 607

Protein sequence:

>607_residues
MQRKQPIQRLNHYSKWKYIVLITTLVILLLSAIPTWYGEDAAVQITNKDGHIPSIVSLQNTLTEQGINVKRIEQKGDKTI
VILKDEAQQVAAKDVLGSVIDESQKGTTLALSLAPAAPAWLQNMGFEPIKLGLDLRGGVQFLLDVDVNQVYQAQRNELAD
SLKQELREERIRSVRLQKVDSDTLVVHLPSEEASHAARQFIHKNYPTWQITNDDGFDLKLTLKEDEKIAVRNLTVQQNLQ
TMRSRIEELGITEALVQRQGENRIRIELPGVQDPAAAKNVIGATASLAFYAVKEQGTGSTMVIPDQNGQPVRVGRKPVLT
GDHIVDARASLGEMGMAEVNIVLDSSGGKIMSEFSRHNVGKPMATSYNEYSRDSAGNTEQSNQIISVATIQSQLGSRFRI
TGSGSLQESQELALLLRAGSLTAPVTIVEERTIGPTLGAENIQNGFAALGLGLGLTLLFMAVWYRRLGWVANIALIGNMV
MLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKQKEGRTLAQAIDRGFSSAFGTIFDANFTTMITAVVLY
TIGNGPIQGFALTLGLGLLTSMFTGIFASRAIINLVWGRDSRHDVRV

Sequences:

>Translated_607_residues
MQRKQPIQRLNHYSKWKYIVLITTLVILLLSAIPTWYGEDAAVQITNKDGHIPSIVSLQNTLTEQGINVKRIEQKGDKTI
VILKDEAQQVAAKDVLGSVIDESQKGTTLALSLAPAAPAWLQNMGFEPIKLGLDLRGGVQFLLDVDVNQVYQAQRNELAD
SLKQELREERIRSVRLQKVDSDTLVVHLPSEEASHAARQFIHKNYPTWQITNDDGFDLKLTLKEDEKIAVRNLTVQQNLQ
TMRSRIEELGITEALVQRQGENRIRIELPGVQDPAAAKNVIGATASLAFYAVKEQGTGSTMVIPDQNGQPVRVGRKPVLT
GDHIVDARASLGEMGMAEVNIVLDSSGGKIMSEFSRHNVGKPMATSYNEYSRDSAGNTEQSNQIISVATIQSQLGSRFRI
TGSGSLQESQELALLLRAGSLTAPVTIVEERTIGPTLGAENIQNGFAALGLGLGLTLLFMAVWYRRLGWVANIALIGNMV
MLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKQKEGRTLAQAIDRGFSSAFGTIFDANFTTMITAVVLY
TIGNGPIQGFALTLGLGLLTSMFTGIFASRAIINLVWGRDSRHDVRV
>Mature_607_residues
MQRKQPIQRLNHYSKWKYIVLITTLVILLLSAIPTWYGEDAAVQITNKDGHIPSIVSLQNTLTEQGINVKRIEQKGDKTI
VILKDEAQQVAAKDVLGSVIDESQKGTTLALSLAPAAPAWLQNMGFEPIKLGLDLRGGVQFLLDVDVNQVYQAQRNELAD
SLKQELREERIRSVRLQKVDSDTLVVHLPSEEASHAARQFIHKNYPTWQITNDDGFDLKLTLKEDEKIAVRNLTVQQNLQ
TMRSRIEELGITEALVQRQGENRIRIELPGVQDPAAAKNVIGATASLAFYAVKEQGTGSTMVIPDQNGQPVRVGRKPVLT
GDHIVDARASLGEMGMAEVNIVLDSSGGKIMSEFSRHNVGKPMATSYNEYSRDSAGNTEQSNQIISVATIQSQLGSRFRI
TGSGSLQESQELALLLRAGSLTAPVTIVEERTIGPTLGAENIQNGFAALGLGLGLTLLFMAVWYRRLGWVANIALIGNMV
MLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKQKEGRTLAQAIDRGFSSAFGTIFDANFTTMITAVVLY
TIGNGPIQGFALTLGLGLLTSMFTGIFASRAIINLVWGRDSRHDVRV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=608, Percent_Identity=43.0921052631579, Blast_Score=500, Evalue=1e-142,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66213; Mature: 66213

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRKQPIQRLNHYSKWKYIVLITTLVILLLSAIPTWYGEDAAVQITNKDGHIPSIVSLQN
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHH
TLTEQGINVKRIEQKGDKTIVILKDEAQQVAAKDVLGSVIDESQKGTTLALSLAPAAPAW
HHHHCCCCCEEHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHH
LQNMGFEPIKLGLDLRGGVQFLLDVDVNQVYQAQRNELADSLKQELREERIRSVRLQKVD
HHHCCCCEEEECEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SDTLVVHLPSEEASHAARQFIHKNYPTWQITNDDGFDLKLTLKEDEKIAVRNLTVQQNLQ
CCEEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCEEEEHHHHHHHHHH
TMRSRIEELGITEALVQRQGENRIRIELPGVQDPAAAKNVIGATASLAFYAVKEQGTGST
HHHHHHHHCCHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHEEEEEEEECCCCCE
MVIPDQNGQPVRVGRKPVLTGDHIVDARASLGEMGMAEVNIVLDSSGGKIMSEFSRHNVG
EEEECCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHCCCC
KPMATSYNEYSRDSAGNTEQSNQIISVATIQSQLGSRFRITGSGSLQESQELALLLRAGS
CCCCCCCCHHCCCCCCCCCCCCCEEEEEEEHHHHCCEEEEECCCCCCHHHHHEEHEECCC
LTAPVTIVEERTIGPTLGAENIQNGFAALGLGLGLTLLFMAVWYRRLGWVANIALIGNMV
CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKQKEGRTLAQAIDRGFSS
HHHHHHHHHCCHHHHHCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
AFGTIFDANFTTMITAVVLYTIGNGPIQGFALTLGLGLLTSMFTGIFASRAIINLVWGRD
HHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
SRHDVRV
CCCCCCC
>Mature Secondary Structure
MQRKQPIQRLNHYSKWKYIVLITTLVILLLSAIPTWYGEDAAVQITNKDGHIPSIVSLQN
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHH
TLTEQGINVKRIEQKGDKTIVILKDEAQQVAAKDVLGSVIDESQKGTTLALSLAPAAPAW
HHHHCCCCCEEHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHH
LQNMGFEPIKLGLDLRGGVQFLLDVDVNQVYQAQRNELADSLKQELREERIRSVRLQKVD
HHHCCCCEEEECEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SDTLVVHLPSEEASHAARQFIHKNYPTWQITNDDGFDLKLTLKEDEKIAVRNLTVQQNLQ
CCEEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCEEEEHHHHHHHHHH
TMRSRIEELGITEALVQRQGENRIRIELPGVQDPAAAKNVIGATASLAFYAVKEQGTGST
HHHHHHHHCCHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHEEEEEEEECCCCCE
MVIPDQNGQPVRVGRKPVLTGDHIVDARASLGEMGMAEVNIVLDSSGGKIMSEFSRHNVG
EEEECCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHCCCC
KPMATSYNEYSRDSAGNTEQSNQIISVATIQSQLGSRFRITGSGSLQESQELALLLRAGS
CCCCCCCCHHCCCCCCCCCCCCCEEEEEEEHHHHCCEEEEECCCCCCHHHHHEEHEECCC
LTAPVTIVEERTIGPTLGAENIQNGFAALGLGLGLTLLFMAVWYRRLGWVANIALIGNMV
CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKQKEGRTLAQAIDRGFSS
HHHHHHHHHCCHHHHHCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
AFGTIFDANFTTMITAVVLYTIGNGPIQGFALTLGLGLLTSMFTGIFASRAIINLVWGRD
HHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
SRHDVRV
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]