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The map label for this gene is yfcH [H]

Identifier: 59711395

GI number: 59711395

Start: 862342

End: 863247

Strand: Reverse

Name: yfcH [H]

Synonym: VF_0788

Alternate gene names: 59711395

Gene position: 863247-862342 (Counterclockwise)

Preceding gene: 59711397

Following gene: 59711394

Centisome position: 29.79

GC content: 36.98

Gene sequence:

>906_bases
ATGAAAATACTCATAACAGGTAGTACAGGATTAATAGGAAAGCAATTACTCGACCACCTAAAAGGGCATCACTTAATCCT
TCTTACTCGAAATATAAAAAAAGCCCAACTTTCTTTAAACCACCTTGCTTTACCACATGTAGAGTTTGTTTCTGACCTGT
CATCTTTTCCAAATTTCAATGATATAGATATTATTATCAATCTAGCTGGAGAACCAATTGCCGATAAAAAATGGACAAAA
AAACAAAAGAAAAAAATCATTCAGAGTAGATGTGAACTAACACAACAGCTTTCTGAACTTTGTCTTGCCTCTTCAACTCC
ACCTAGTTGTTTTATTTCTGGATCAGCTATCGGCTATTACGGCAATCATGATAATAAGAACATAGACGAAAGCATGCAGG
TATCCCTACCCGATTTTACTCATCAAGTATGTCAAGAATGGGAAAGCAAAGCACTCCAAGCTCAAAACGACAATACTCGA
GTTTGCATACTGCGTACTGGCATTGTGTTATCGCAATCTGGTGGAGCACTAGGAAAAATGTTACTCCCATACAAACTCGG
TTTAGGTGGACCAATCGGTAACGGTAAACAATATATGTCATGGATACATATTGATGATATGGTTTCTGCTATCTTACACT
TAGTTTTTGAAGAGCAAAGCCATGGTATTTATAACATCACGGCTCCTCACCCTGTAACCAACCGCGTATTTAGCCAAGCC
TTAGCAGGAACACTGCAACGCCCACATTTTTTATTCACCCCTAAATTATTAATTAAAACAATTCTAGGTGAATCCGCAGT
ATTACTTTTAGATAGCCAACGTATAAGACCAAAACGTTTAGTTAATGAAGGATTCAAATTTCGCTACTCACGGATAGAAT
CGGCATTAAAACAACTTCTACAATAA

Upstream 100 bases:

>100_bases
CGAACACAAAGTATAAAGGAAATGTAAGCAAAGTTGCCAATCATTGAAGTCAATTTATACTTAGTTAGACAGATAACGAA
AATATCTTGCAGGAGACGAG

Downstream 100 bases:

>100_bases
CCTCGCCCCTTCCACTTTAAAATATCATTCACTTCGAGTAGACAATGTCATTGTTTATCGAAGTGAAGATAGAACTGATC
ATTAGCACATAGTTCCCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MKILITGSTGLIGKQLLDHLKGHHLILLTRNIKKAQLSLNHLALPHVEFVSDLSSFPNFNDIDIIINLAGEPIADKKWTK
KQKKKIIQSRCELTQQLSELCLASSTPPSCFISGSAIGYYGNHDNKNIDESMQVSLPDFTHQVCQEWESKALQAQNDNTR
VCILRTGIVLSQSGGALGKMLLPYKLGLGGPIGNGKQYMSWIHIDDMVSAILHLVFEEQSHGIYNITAPHPVTNRVFSQA
LAGTLQRPHFLFTPKLLIKTILGESAVLLLDSQRIRPKRLVNEGFKFRYSRIESALKQLLQ

Sequences:

>Translated_301_residues
MKILITGSTGLIGKQLLDHLKGHHLILLTRNIKKAQLSLNHLALPHVEFVSDLSSFPNFNDIDIIINLAGEPIADKKWTK
KQKKKIIQSRCELTQQLSELCLASSTPPSCFISGSAIGYYGNHDNKNIDESMQVSLPDFTHQVCQEWESKALQAQNDNTR
VCILRTGIVLSQSGGALGKMLLPYKLGLGGPIGNGKQYMSWIHIDDMVSAILHLVFEEQSHGIYNITAPHPVTNRVFSQA
LAGTLQRPHFLFTPKLLIKTILGESAVLLLDSQRIRPKRLVNEGFKFRYSRIESALKQLLQ
>Mature_301_residues
MKILITGSTGLIGKQLLDHLKGHHLILLTRNIKKAQLSLNHLALPHVEFVSDLSSFPNFNDIDIIINLAGEPIADKKWTK
KQKKKIIQSRCELTQQLSELCLASSTPPSCFISGSAIGYYGNHDNKNIDESMQVSLPDFTHQVCQEWESKALQAQNDNTR
VCILRTGIVLSQSGGALGKMLLPYKLGLGGPIGNGKQYMSWIHIDDMVSAILHLVFEEQSHGIYNITAPHPVTNRVFSQA
LAGTLQRPHFLFTPKLLIKTILGESAVLLLDSQRIRPKRLVNEGFKFRYSRIESALKQLLQ

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=305, Percent_Identity=32.7868852459016, Blast_Score=192, Evalue=4e-49,
Organism=Escherichia coli, GI1788642, Length=303, Percent_Identity=48.8448844884488, Blast_Score=294, Evalue=6e-81,
Organism=Drosophila melanogaster, GI28573846, Length=301, Percent_Identity=30.2325581395349, Blast_Score=165, Evalue=3e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 33610; Mature: 33610

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILITGSTGLIGKQLLDHLKGHHLILLTRNIKKAQLSLNHLALPHVEFVSDLSSFPNFN
CEEEEECCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHCCCCC
DIDIIINLAGEPIADKKWTKKQKKKIIQSRCELTQQLSELCLASSTPPSCFISGSAIGYY
CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEEC
GNHDNKNIDESMQVSLPDFTHQVCQEWESKALQAQNDNTRVCILRTGIVLSQSGGALGKM
CCCCCCCCCCHHEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECEEEECCCCCHHHH
LLPYKLGLGGPIGNGKQYMSWIHIDDMVSAILHLVFEEQSHGIYNITAPHPVTNRVFSQA
HHHEECCCCCCCCCCHHHHHEECHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
LAGTLQRPHFLFTPKLLIKTILGESAVLLLDSQRIRPKRLVNEGFKFRYSRIESALKQLL
HHHHHCCCCEEECHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q
C
>Mature Secondary Structure
MKILITGSTGLIGKQLLDHLKGHHLILLTRNIKKAQLSLNHLALPHVEFVSDLSSFPNFN
CEEEEECCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHCCCCC
DIDIIINLAGEPIADKKWTKKQKKKIIQSRCELTQQLSELCLASSTPPSCFISGSAIGYY
CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEEC
GNHDNKNIDESMQVSLPDFTHQVCQEWESKALQAQNDNTRVCILRTGIVLSQSGGALGKM
CCCCCCCCCCHHEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECEEEECCCCCHHHH
LLPYKLGLGGPIGNGKQYMSWIHIDDMVSAILHLVFEEQSHGIYNITAPHPVTNRVFSQA
HHHEECCCCCCCCCCHHHHHEECHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
LAGTLQRPHFLFTPKLLIKTILGESAVLLLDSQRIRPKRLVNEGFKFRYSRIESALKQLL
HHHHHCCCCEEECHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]