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The map label for this gene is nirD [H]

Identifier: 59711382

GI number: 59711382

Start: 844301

End: 844630

Strand: Reverse

Name: nirD [H]

Synonym: VF_0775

Alternate gene names: 59711382

Gene position: 844630-844301 (Counterclockwise)

Preceding gene: 59711383

Following gene: 59711381

Centisome position: 29.15

GC content: 40.91

Gene sequence:

>330_bases
ATGGCTGCTAAATTTCAAAAAATCTGCCAACTCGATGACATCATCCCTGGCACTGGTGTTTGTGCACTTGTAAATGGCGA
ACAAGTGGCTGTATTTCGTCCAAGAGAAAATGATGAAGTCTTTGCTATTAGTAATCGTGACCCATTCGCTAATTCAAACG
TACTTTCTCGTGGTTTAACGGGTGAACACCAAGGCGAACTTTGGGTAGCAAGTCCACTAAAGAAACAACACTTTAATTTA
GTGACTGGTGCATGTATGGAAGACGAGCGTTTTAACGTAAAGACATACAAAGTTCGTGTAGCTAACGGACATGTTGAAAT
CTCAGCATAA

Upstream 100 bases:

>100_bases
GTGAACAACACCGTCCTGCAACATACACAGAGAAAAACCCAAATGCAAAAGGCGATATTCTGCATGTCGCTCTAACTGAT
GCAACAGTGGAGAAATAATC

Downstream 100 bases:

>100_bases
GAAGATTTGATAGTTCAAGGGTTTTAGTCTCCTATTTACTGCTCATAAAACAGCGACTAGAGCCCTTTCCTATCCAATTT
TTAATTTTAACTTTTAGTAA

Product: nitrite reductase small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MAAKFQKICQLDDIIPGTGVCALVNGEQVAVFRPRENDEVFAISNRDPFANSNVLSRGLTGEHQGELWVASPLKKQHFNL
VTGACMEDERFNVKTYKVRVANGHVEISA

Sequences:

>Translated_109_residues
MAAKFQKICQLDDIIPGTGVCALVNGEQVAVFRPRENDEVFAISNRDPFANSNVLSRGLTGEHQGELWVASPLKKQHFNL
VTGACMEDERFNVKTYKVRVANGHVEISA
>Mature_108_residues
AAKFQKICQLDDIIPGTGVCALVNGEQVAVFRPRENDEVFAISNRDPFANSNVLSRGLTGEHQGELWVASPLKKQHFNLV
TGACMEDERFNVKTYKVRVANGHVEISA

Specific function: Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis nasE [H]

Homologues:

Organism=Escherichia coli, GI1789766, Length=105, Percent_Identity=63.8095238095238, Blast_Score=149, Evalue=5e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017881
- InterPro:   IPR017941 [H]

Pfam domain/function: NA

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 12045; Mature: 11914

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKFQKICQLDDIIPGTGVCALVNGEQVAVFRPRENDEVFAISNRDPFANSNVLSRGLT
CCCCHHHHHHHCCCCCCCCEEEEECCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCC
GEHQGELWVASPLKKQHFNLVTGACMEDERFNVKTYKVRVANGHVEISA
CCCCCCEEEECCCCCCCCEEEECCEECCCCCCEEEEEEEEECCEEEEEC
>Mature Secondary Structure 
AAKFQKICQLDDIIPGTGVCALVNGEQVAVFRPRENDEVFAISNRDPFANSNVLSRGLT
CCCHHHHHHHCCCCCCCCEEEEECCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCC
GEHQGELWVASPLKKQHFNLVTGACMEDERFNVKTYKVRVANGHVEISA
CCCCCCEEEECCCCCCCCEEEECCEECCCCCCEEEEEEEEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]