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The map label for this gene is yodB [H]

Identifier: 57652145

GI number: 57652145

Start: 2175478

End: 2175813

Strand: Reverse

Name: yodB [H]

Synonym: SACOL2115

Alternate gene names: 57652145

Gene position: 2175813-2175478 (Counterclockwise)

Preceding gene: 57652146

Following gene: 57652144

Centisome position: 77.45

GC content: 35.42

Gene sequence:

>336_bases
ATGGAAGTATGTCCGTATCTCGAAGAAACTTTTAAAATACTTGGTAGAAGTTGGAATGGATTAATCATTAATTATCTCTC
AAGATGTAATGACTGTTCAGCACACTTTTCCGATATGAAAAGAGATTTGAAAACAATAACACCACGTGCTTTAAGTCTTA
AGTTGTCAGAGCTTGCACAATGGGAGTTAGTTGAGAAGCAAATCATTTCTACGAGTCCAGTACAAATTATTTATGTGCTA
ACTGAAAAAGGTAAAGCGTTAGCAGAGGCTTTACATCCAATTGAAGCATGGGCGCAATCATATGTCGATTTAACAGATCA
ACGTACTGCTAAATAA

Upstream 100 bases:

>100_bases
GAAACTGTATAGATTTATCTTGTTTTGTGGTATAATAATTATACTGATTAAAAAATGGTGTTCGTTTACATTCTAAATTT
ATTGATGAGAGGTGAAGATG

Downstream 100 bases:

>100_bases
TTACATGACGTTTAAACATAGCATTGATTATAACTATTTCTAAGTCTTCGCATTATTTGCGATGATGTGGGAATAGTTAT
TTTTATTTAAAAATATAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MEVCPYLEETFKILGRSWNGLIINYLSRCNDCSAHFSDMKRDLKTITPRALSLKLSELAQWELVEKQIISTSPVQIIYVL
TEKGKALAEALHPIEAWAQSYVDLTDQRTAK

Sequences:

>Translated_111_residues
MEVCPYLEETFKILGRSWNGLIINYLSRCNDCSAHFSDMKRDLKTITPRALSLKLSELAQWELVEKQIISTSPVQIIYVL
TEKGKALAEALHPIEAWAQSYVDLTDQRTAK
>Mature_111_residues
MEVCPYLEETFKILGRSWNGLIINYLSRCNDCSAHFSDMKRDLKTITPRALSLKLSELAQWELVEKQIISTSPVQIIYVL
TEKGKALAEALHPIEAWAQSYVDLTDQRTAK

Specific function: Negatively regulates yodC and azoR1 which may contribute to the degradation of aromatic compounds. Probably positively regulates the catechol-specific transcription of mhqNOP, mhqED, and mhqA [H]

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12686; Mature: 12686

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVCPYLEETFKILGRSWNGLIINYLSRCNDCSAHFSDMKRDLKTITPRALSLKLSELAQ
CCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
WELVEKQIISTSPVQIIYVLTEKGKALAEALHPIEAWAQSYVDLTDQRTAK
HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEVCPYLEETFKILGRSWNGLIINYLSRCNDCSAHFSDMKRDLKTITPRALSLKLSELAQ
CCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
WELVEKQIISTSPVQIIYVLTEKGKALAEALHPIEAWAQSYVDLTDQRTAK
HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]