Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
---|---|
Accession | NC_002951 |
Length | 2,809,422 |
Click here to switch to the map view.
The map label for this gene is ytpR [H]
Identifier: 57652040
GI number: 57652040
Start: 1840963
End: 1841559
Strand: Reverse
Name: ytpR [H]
Synonym: SACOL1792
Alternate gene names: 57652040
Gene position: 1841559-1840963 (Counterclockwise)
Preceding gene: 57652041
Following gene: 57652039
Centisome position: 65.55
GC content: 31.32
Gene sequence:
>597_bases ATGAATTTATTTTACAATCCTAAATATGTAGGAGATGTCGCATTTTTACAAATTGAACCAGTTGAAGGTGAATTAAACTA CAATAAAAAAGGTAATGTTGTTGAAATTACTAATGAAGGTAATGTTGTAGGTTATAATATTTTTGAAATTTCAAAAGATA TAACAATTGAAGAAAAAGGTCATATTAAATTAACTGATGAACTTGTAAATGTATTCCAAAAGCGTATTTCAGAAGCTGGT TTTGATTATAAATTAAATGCTGATCTATCACCGAAATTTGTAGTTGGCTACGTTGAAACTAAAGACAAACATCCTGATGC AGATAAATTAAGTGTACTAAATGTAAACGTTGGAAATGACACATTACAAATTGTATGTGGCGCGCCTAACGTTGAAGCTG GACAGAAAGTTGTTGTTGCTAAAGTAGGTGCAGTGATGCCTAGCGGTATGGTAATTAAAGATGCTGAATTACGTGGTGTT GCCTCAAGCGGTATGATTTGTTCAATGAAAGAATTGAATTTACCTAATGCACCTGAAGAAAAAGGTATTATGGTATTAAA TGACAGCTATGAAATTGGACAAGCATTTTTTGAATAA
Upstream 100 bases:
>100_bases AAACAAAAAAGAGATCCAAACGTGATTCAGCGTTTAGAAGCAAATCGTCGTAAATTTGATAAAGATAAATAGAAATAATT GGATAAGGAGTTTTGTCATA
Downstream 100 bases:
>100_bases TTAAGGAAGGTAGTGAAAATATGAGCTGGTTTGATAAATTATTCGGCGAAGATAATGATTCAAATGATGACTTGATTCAT AGAAAGAAAAAAAGACGTCA
Product: hypothetical protein
Products: AMP; diphosphate; L-phenylalanyl-tRNAPhe [C]
Alternate protein names: Partial phenylalanyl-tRNA synthetase; Partial PheRS; pFRS [H]
Number of amino acids: Translated: 198; Mature: 198
Protein sequence:
>198_residues MNLFYNPKYVGDVAFLQIEPVEGELNYNKKGNVVEITNEGNVVGYNIFEISKDITIEEKGHIKLTDELVNVFQKRISEAG FDYKLNADLSPKFVVGYVETKDKHPDADKLSVLNVNVGNDTLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGV ASSGMICSMKELNLPNAPEEKGIMVLNDSYEIGQAFFE
Sequences:
>Translated_198_residues MNLFYNPKYVGDVAFLQIEPVEGELNYNKKGNVVEITNEGNVVGYNIFEISKDITIEEKGHIKLTDELVNVFQKRISEAG FDYKLNADLSPKFVVGYVETKDKHPDADKLSVLNVNVGNDTLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGV ASSGMICSMKELNLPNAPEEKGIMVLNDSYEIGQAFFE >Mature_198_residues MNLFYNPKYVGDVAFLQIEPVEGELNYNKKGNVVEITNEGNVVGYNIFEISKDITIEEKGHIKLTDELVNVFQKRISEAG FDYKLNADLSPKFVVGYVETKDKHPDADKLSVLNVNVGNDTLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGV ASSGMICSMKELNLPNAPEEKGIMVLNDSYEIGQAFFE
Specific function: Unknown
COG id: COG0073
COG function: function code R; EMAP domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=92, Percent_Identity=50, Blast_Score=84, Evalue=5e-18,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR002547 [H]
Pfam domain/function: PF01588 tRNA_bind [H]
EC number: 6.1.1.20 [C]
Molecular weight: Translated: 21690; Mature: 21690
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLFYNPKYVGDVAFLQIEPVEGELNYNKKGNVVEITNEGNVVGYNIFEISKDITIEEKG CCCEECCCEECCEEEEEEEECCCEECCCCCCCEEEECCCCCEEEEEEEEECCCEEEECCC HIKLTDELVNVFQKRISEAGFDYKLNADLSPKFVVGYVETKDKHPDADKLSVLNVNVGND CEEEHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCC TLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGVASSGMICSMKELNLPNAPEE EEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCC KGIMVLNDSYEIGQAFFE CCEEEEECCHHHHHHHCC >Mature Secondary Structure MNLFYNPKYVGDVAFLQIEPVEGELNYNKKGNVVEITNEGNVVGYNIFEISKDITIEEKG CCCEECCCEECCEEEEEEEECCCEECCCCCCCEEEECCCCCEEEEEEEEECCCEEEECCC HIKLTDELVNVFQKRISEAGFDYKLNADLSPKFVVGYVETKDKHPDADKLSVLNVNVGND CEEEHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCC TLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGVASSGMICSMKELNLPNAPEE EEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCC KGIMVLNDSYEIGQAFFE CCEEEEECCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Mg2+; Zn2+ [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 0.125 {2'-deoxyadenosine} 0.009 {ATP}} 0.2 {2-chloroadenosine} 0.11 {2-chloroadenosine} [C]
Substrates: ATP; @PHEN01.txt*phenylalanine!; tRNAPhe [C]
Specific reaction: ATP + @PHEN01.txt*phenylalanine! + tRNAPhe = AMP + diphosphate + L-phenylalanyl-tRNAPhe [C]
General reaction: Aminoacylation; Esterification [C]
Inhibitor: 3'-Deoxyadenosine 5'-triphosphate; 3'-Methyl adenosine 5'-triphosphate; Zn2+ [C]
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]