Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
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Accession | NC_002951 |
Length | 2,809,422 |
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The map label for this gene is serA [H]
Identifier: 57652022
GI number: 57652022
Start: 1811884
End: 1813488
Strand: Direct
Name: serA [H]
Synonym: SACOL1773
Alternate gene names: 57652022
Gene position: 1811884-1813488 (Clockwise)
Preceding gene: 57652021
Following gene: 57652026
Centisome position: 64.49
GC content: 34.64
Gene sequence:
>1605_bases ATGAAGCAATTTAATGTACTCGTTGCAGATCCCATATCAAAAGATGGTATCAAAGCATTATTAGATCACGAACAATTCAA TGTAGATATTCAAACTGGCTTGTCCGAAGAAGCATTAATCAAAATTATACCTTCATACCATGCTTTAATCGTTCGTAGTC AAACTACGGTTACTGAAAATATCATAAATGCTGCTGATTCTTTAAAAGTAATCGCACGCGCCGGTGTTGGTGTAGATAAT ATTAATATTGATGCTGCAACATTAAAAGGTATTTTAGTTATTAATGCCCCAGATGGTAATACGATTTCAGCTACTGAACA TACACTGGCAATGTTATTATCAATGGCACGAAATATTCCGCAAGCACACCAATCACTTACAAATAAAGAATGGAATCGAA ATGCATTTAAAGGTACTGAGCTTTATCATAAAACATTAGGTGTCATTGGTGCTGGTAGAATTGGTTTAGGTGTTGCTAAA CGTGCGCAAAGTTTCGGAATGAAAATACTAGCTTTTGACCCTTACTTAACGGATGAAAAAGCAAAATCTTTAAGCATTAC GAAGGCAACAGTTGATGAGATTGCCCAACATTCTGATTTCGTTACATTACATACACCACTAACACCTAAAACAAAAGGCT TAATTAATGCTGTCTTTTTTGCCAAAGCAAAACCTAGTTTGCAAATAATCAATGTGGCACGTGGTGGTATTATTGATGAA AAGGCGCTAATAAAAGCATTAGACGAAGGACAAATTAGTCGGGCAGCTATCGATGTGTTTGAACATGAACCTGCAACTGA CTCGCCTCTTGTTGCACATGATAAAATTATTGTTACACCTCATTTGGGTGCTTCAACAGTCGAAGCTCAAGAAAAAGTGG CAATTTCTGTTTCAAATGAAATCATCGAAATTTTAATTGATGGTACTGTAACGCATGCAGTGAATGCACCTAAAATGGAC TTAAGCAATATAGATGATACTGTAAAATCATTCATCAATTTAAGCCAAACAGTTGGTGAATTAGCTATTCAATTAATGTA CAATGCACCAAGCTCTATTAAAATTACGTACGGTGGCGACTTAGCCTCTATTGATAGTAGTTTATTAACACGTACAATTA TTACTCATATTTTAAAAGATGATCTTGGTCCTGAAGTCAATATTATCAATGCTCTAATGTTGTTAAATCAACAACAAGTG ACATTAAATATTGAAAATAATAAAGCAGAGACAGGTTTTAGTAACTACTTAGAGGTAGAACTATCAAACGATAGCGATTC CGTTAAAGTTGGCGCTTCTGTCTTTACAGGTTTCGGTCCAAGAATTGTTAGAATTAATAATTTTTCTGTAGACTTAAAGC CAAATCAATATCAAATTGTGTCATATCATAATGATACTCCAGGTATGGTAGGAAAAACTGGCGCATTGTTAGGTAAATAC AATATCAACATTGCATCTATGACTTTAGGTAGAACTGAAGCGGGCGGAGATGCGCTAATGATTTTATCCGTTGATCAACC TGTTTCAAACAATATAATTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGT CATAA
Upstream 100 bases:
>100_bases GATATTTTATCGGTAGTATCTGCTTTAGAAATTATTTTAACTGAACACCGTAAAGTTAACTATATCGGTAAAGGTATATC AAAATATATGGAGGTTATTC
Downstream 100 bases:
>100_bases ACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTC ATTGTAACTCAATATGAAAC
Product: D-3-phosphoglycerate dehydrogenase
Products: NA
Alternate protein names: PGDH [H]
Number of amino acids: Translated: 534; Mature: 534
Protein sequence:
>534_residues MKQFNVLVADPISKDGIKALLDHEQFNVDIQTGLSEEALIKIIPSYHALIVRSQTTVTENIINAADSLKVIARAGVGVDN INIDAATLKGILVINAPDGNTISATEHTLAMLLSMARNIPQAHQSLTNKEWNRNAFKGTELYHKTLGVIGAGRIGLGVAK RAQSFGMKILAFDPYLTDEKAKSLSITKATVDEIAQHSDFVTLHTPLTPKTKGLINAVFFAKAKPSLQIINVARGGIIDE KALIKALDEGQISRAAIDVFEHEPATDSPLVAHDKIIVTPHLGASTVEAQEKVAISVSNEIIEILIDGTVTHAVNAPKMD LSNIDDTVKSFINLSQTVGELAIQLMYNAPSSIKITYGGDLASIDSSLLTRTIITHILKDDLGPEVNIINALMLLNQQQV TLNIENNKAETGFSNYLEVELSNDSDSVKVGASVFTGFGPRIVRINNFSVDLKPNQYQIVSYHNDTPGMVGKTGALLGKY NINIASMTLGRTEAGGDALMILSVDQPVSNNIIDELKQVGEYNQIFTTELTVQS
Sequences:
>Translated_534_residues MKQFNVLVADPISKDGIKALLDHEQFNVDIQTGLSEEALIKIIPSYHALIVRSQTTVTENIINAADSLKVIARAGVGVDN INIDAATLKGILVINAPDGNTISATEHTLAMLLSMARNIPQAHQSLTNKEWNRNAFKGTELYHKTLGVIGAGRIGLGVAK RAQSFGMKILAFDPYLTDEKAKSLSITKATVDEIAQHSDFVTLHTPLTPKTKGLINAVFFAKAKPSLQIINVARGGIIDE KALIKALDEGQISRAAIDVFEHEPATDSPLVAHDKIIVTPHLGASTVEAQEKVAISVSNEIIEILIDGTVTHAVNAPKMD LSNIDDTVKSFINLSQTVGELAIQLMYNAPSSIKITYGGDLASIDSSLLTRTIITHILKDDLGPEVNIINALMLLNQQQV TLNIENNKAETGFSNYLEVELSNDSDSVKVGASVFTGFGPRIVRINNFSVDLKPNQYQIVSYHNDTPGMVGKTGALLGKY NINIASMTLGRTEAGGDALMILSVDQPVSNNIIDELKQVGEYNQIFTTELTVQS >Mature_534_residues MKQFNVLVADPISKDGIKALLDHEQFNVDIQTGLSEEALIKIIPSYHALIVRSQTTVTENIINAADSLKVIARAGVGVDN INIDAATLKGILVINAPDGNTISATEHTLAMLLSMARNIPQAHQSLTNKEWNRNAFKGTELYHKTLGVIGAGRIGLGVAK RAQSFGMKILAFDPYLTDEKAKSLSITKATVDEIAQHSDFVTLHTPLTPKTKGLINAVFFAKAKPSLQIINVARGGIIDE KALIKALDEGQISRAAIDVFEHEPATDSPLVAHDKIIVTPHLGASTVEAQEKVAISVSNEIIEILIDGTVTHAVNAPKMD LSNIDDTVKSFINLSQTVGELAIQLMYNAPSSIKITYGGDLASIDSSLLTRTIITHILKDDLGPEVNIINALMLLNQQQV TLNIENNKAETGFSNYLEVELSNDSDSVKVGASVFTGFGPRIVRINNFSVDLKPNQYQIVSYHNDTPGMVGKTGALLGKY NINIASMTLGRTEAGGDALMILSVDQPVSNNIIDELKQVGEYNQIFTTELTVQS
Specific function: Serine biosynthesis; first step. [C]
COG id: COG0111
COG function: function code HE; Phosphoglycerate dehydrogenase and related dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Homo sapiens, GI23308577, Length=419, Percent_Identity=39.3794749403341, Blast_Score=306, Evalue=2e-83, Organism=Homo sapiens, GI4557497, Length=305, Percent_Identity=33.7704918032787, Blast_Score=149, Evalue=5e-36, Organism=Homo sapiens, GI61743967, Length=311, Percent_Identity=33.4405144694534, Blast_Score=149, Evalue=6e-36, Organism=Homo sapiens, GI6912396, Length=311, Percent_Identity=29.903536977492, Blast_Score=140, Evalue=3e-33, Organism=Homo sapiens, GI145580578, Length=307, Percent_Identity=31.5960912052117, Blast_Score=138, Evalue=1e-32, Organism=Homo sapiens, GI4557499, Length=307, Percent_Identity=31.5960912052117, Blast_Score=138, Evalue=1e-32, Organism=Homo sapiens, GI145580575, Length=307, Percent_Identity=32.2475570032573, Blast_Score=134, Evalue=3e-31, Organism=Escherichia coli, GI1789279, Length=329, Percent_Identity=34.6504559270517, Blast_Score=176, Evalue=3e-45, Organism=Escherichia coli, GI87082289, Length=271, Percent_Identity=34.3173431734317, Blast_Score=158, Evalue=1e-39, Organism=Escherichia coli, GI1787645, Length=196, Percent_Identity=34.1836734693878, Blast_Score=134, Evalue=2e-32, Organism=Escherichia coli, GI1788660, Length=252, Percent_Identity=31.7460317460317, Blast_Score=89, Evalue=8e-19, Organism=Escherichia coli, GI87081824, Length=170, Percent_Identity=30, Blast_Score=74, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17532191, Length=312, Percent_Identity=42.3076923076923, Blast_Score=253, Evalue=1e-67, Organism=Caenorhabditis elegans, GI25147481, Length=320, Percent_Identity=29.375, Blast_Score=136, Evalue=3e-32, Organism=Saccharomyces cerevisiae, GI6320925, Length=319, Percent_Identity=33.8557993730408, Blast_Score=186, Evalue=6e-48, Organism=Saccharomyces cerevisiae, GI6322116, Length=336, Percent_Identity=33.3333333333333, Blast_Score=186, Evalue=1e-47, Organism=Saccharomyces cerevisiae, GI6324055, Length=250, Percent_Identity=28.8, Blast_Score=115, Evalue=1e-26, Organism=Saccharomyces cerevisiae, GI6324964, Length=270, Percent_Identity=28.5185185185185, Blast_Score=109, Evalue=1e-24, Organism=Saccharomyces cerevisiae, GI6321253, Length=157, Percent_Identity=33.1210191082803, Blast_Score=74, Evalue=6e-14, Organism=Saccharomyces cerevisiae, GI6324980, Length=191, Percent_Identity=26.7015706806283, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI19921140, Length=304, Percent_Identity=44.078947368421, Blast_Score=265, Evalue=9e-71, Organism=Drosophila melanogaster, GI24646446, Length=311, Percent_Identity=31.8327974276527, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI24646448, Length=311, Percent_Identity=31.8327974276527, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI24646452, Length=311, Percent_Identity=31.8327974276527, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI24646450, Length=311, Percent_Identity=31.8327974276527, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI62472511, Length=311, Percent_Identity=31.8327974276527, Blast_Score=140, Evalue=2e-33, Organism=Drosophila melanogaster, GI28571528, Length=311, Percent_Identity=30.5466237942122, Blast_Score=125, Evalue=8e-29, Organism=Drosophila melanogaster, GI28574286, Length=313, Percent_Identity=26.8370607028754, Blast_Score=120, Evalue=3e-27, Organism=Drosophila melanogaster, GI45551003, Length=317, Percent_Identity=25.2365930599369, Blast_Score=105, Evalue=9e-23, Organism=Drosophila melanogaster, GI28574284, Length=317, Percent_Identity=25.2365930599369, Blast_Score=105, Evalue=9e-23, Organism=Drosophila melanogaster, GI24585514, Length=317, Percent_Identity=25.2365930599369, Blast_Score=105, Evalue=1e-22, Organism=Drosophila melanogaster, GI28574282, Length=317, Percent_Identity=25.2365930599369, Blast_Score=105, Evalue=1e-22, Organism=Drosophila melanogaster, GI45552429, Length=298, Percent_Identity=26.510067114094, Blast_Score=104, Evalue=1e-22, Organism=Drosophila melanogaster, GI24585516, Length=308, Percent_Identity=23.3766233766234, Blast_Score=100, Evalue=4e-21,
Paralogues:
None
Copy number: 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR006236 - InterPro: IPR006139 - InterPro: IPR006140 - InterPro: IPR015508 - InterPro: IPR016040 [H]
Pfam domain/function: PF00389 2-Hacid_dh; PF02826 2-Hacid_dh_C; PF01842 ACT [H]
EC number: =1.1.1.95 [H]
Molecular weight: Translated: 57620; Mature: 57620
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: PS00065 D_2_HYDROXYACID_DH_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQFNVLVADPISKDGIKALLDHEQFNVDIQTGLSEEALIKIIPSYHALIVRSQTTVTEN CCCEEEEEECCCCCCHHHHHHCCHHEEEEEECCCCCCHHHEECCCCEEEEEECCCHHHHH IINAADSLKVIARAGVGVDNINIDAATLKGILVINAPDGNTISATEHTLAMLLSMARNIP HHHHHHHHHHHHHCCCCCCCCEEEHHHEEEEEEEECCCCCEECCHHHHHHHHHHHHHCCC QAHQSLTNKEWNRNAFKGTELYHKTLGVIGAGRIGLGVAKRAQSFGMKILAFDPYLTDEK HHHHHHCCCCCCCCCCCCHHHHHHHHHHEECCCHHHHHHHHHHHHCEEEEEECCCCCCCC AKSLSITKATVDEIAQHSDFVTLHTPLTPKTKGLINAVFFAKAKPSLQIINVARGGIIDE CCCEEEHHHHHHHHHHCCCEEEEECCCCCCHHHHHEEEEEECCCCCEEEEEECCCCCCCH KALIKALDEGQISRAAIDVFEHEPATDSPLVAHDKIIVTPHLGASTVEAQEKVAISVSNE HHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEECCEEEEECCCCCCCCCCCCEEEEEECCE IIEILIDGTVTHAVNAPKMDLSNIDDTVKSFINLSQTVGELAIQLMYNAPSSIKITYGGD EEEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCC LASIDSSLLTRTIITHILKDDLGPEVNIINALMLLNQQQVTLNIENNKAETGFSNYLEVE HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEE LSNDSDSVKVGASVFTGFGPRIVRINNFSVDLKPNQYQIVSYHNDTPGMVGKTGALLGKY ECCCCCCEEECHHHHCCCCCEEEEEECEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEE NINIASMTLGRTEAGGDALMILSVDQPVSNNIIDELKQVGEYNQIFTTELTVQS EEEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEECC >Mature Secondary Structure MKQFNVLVADPISKDGIKALLDHEQFNVDIQTGLSEEALIKIIPSYHALIVRSQTTVTEN CCCEEEEEECCCCCCHHHHHHCCHHEEEEEECCCCCCHHHEECCCCEEEEEECCCHHHHH IINAADSLKVIARAGVGVDNINIDAATLKGILVINAPDGNTISATEHTLAMLLSMARNIP HHHHHHHHHHHHHCCCCCCCCEEEHHHEEEEEEEECCCCCEECCHHHHHHHHHHHHHCCC QAHQSLTNKEWNRNAFKGTELYHKTLGVIGAGRIGLGVAKRAQSFGMKILAFDPYLTDEK HHHHHHCCCCCCCCCCCCHHHHHHHHHHEECCCHHHHHHHHHHHHCEEEEEECCCCCCCC AKSLSITKATVDEIAQHSDFVTLHTPLTPKTKGLINAVFFAKAKPSLQIINVARGGIIDE CCCEEEHHHHHHHHHHCCCEEEEECCCCCCHHHHHEEEEEECCCCCEEEEEECCCCCCCH KALIKALDEGQISRAAIDVFEHEPATDSPLVAHDKIIVTPHLGASTVEAQEKVAISVSNE HHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEECCEEEEECCCCCCCCCCCCEEEEEECCE IIEILIDGTVTHAVNAPKMDLSNIDDTVKSFINLSQTVGELAIQLMYNAPSSIKITYGGD EEEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCC LASIDSSLLTRTIITHILKDDLGPEVNIINALMLLNQQQVTLNIENNKAETGFSNYLEVE HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEE LSNDSDSVKVGASVFTGFGPRIVRINNFSVDLKPNQYQIVSYHNDTPGMVGKTGALLGKY ECCCCCCEEECHHHHCCCCCEEEEEECEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEE NINIASMTLGRTEAGGDALMILSVDQPVSNNIIDELKQVGEYNQIFTTELTVQS EEEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377; 7934829 [H]