Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
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Accession | NC_002951 |
Length | 2,809,422 |
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The map label for this gene is yhdW [H]
Identifier: 57652019
GI number: 57652019
Start: 1809354
End: 1810097
Strand: Reverse
Name: yhdW [H]
Synonym: SACOL1770
Alternate gene names: 57652019
Gene position: 1810097-1809354 (Counterclockwise)
Preceding gene: 57652023
Following gene: 57652016
Centisome position: 64.43
GC content: 32.12
Gene sequence:
>744_bases ATGACTCTGAATAAACTGAAAGATGAATTACAAATTGTTTCGCACCGTGGATTGCCGAGTGATTTTCCTGAAAATACAAT GGTCGGTTATCGAGAGGTAATGGGGCTCAATGTTGCTATGTTAGAAATAGATGTTCATTTGACCAAAGACCAACATTTTG TTGTGATACATGATGAAACAATTGATAGAACATCGGATGGTAAGGGGCGTATTGCTGATTACACATTATCGCAATTAAAA TCATTTGATTTTGGTAGTTATAAAGATGTTGCTTTTAAGGGAGAACGAATACCCACGTTAGATGAAGTACTTTCATTATG CTTAAAGTATGATAAAAAGCTATTGATTGAATTGAAAAGTCCGAATTTATATCCAGAAATAGAATGTAAATTGCTGGCAT TTTTGGAAGAAAAGAAAGTCGATGCGACACAAGTAGTTATACAATCTTTTGATATCGAATGCATCGAAAAGTTAAACACA TTGGGCAGTATATATGAATTAGGTGTGCTTTGTAGTAAACGTAATTATTGGTATAAAAAGCCAAACTTTTCAAGAATTGC TCAAATTGCTAGTTATGTTAATCCTAATTATGCATTAGTGACCAGAAAATTTGTTGATAAAGCACATCATCATCAATTAC AGGTTATGCCATACACAGTTAATAAATTGAAAACTGGAGAAAAATTAAGACAAATGGGTGTAGATGGATTAATTACAGAT AATCCGAAATTATTTATTAAGTGA
Upstream 100 bases:
>100_bases TTTAAAGTCATGTTGATGCAATTGCTTTAACCTCCAATATAATTGTGATAGTTTAATTTTAGAATAGTTTATCAAAGTTT AACAGAAAGGTGACTTATCA
Downstream 100 bases:
>100_bases GACGATGAATGGTAATTTGATAGAGGGATGAGGATTCGTATATCGCAATTGATAATTTTAAAAACTAATGATGAAATACT AAAGATAATTAAACAAATAA
Product: glycerophosphoryl diester phosphodiesterase
Products: NA
Alternate protein names: Glycerophosphodiester phosphodiesterase [H]
Number of amino acids: Translated: 247; Mature: 246
Protein sequence:
>247_residues MTLNKLKDELQIVSHRGLPSDFPENTMVGYREVMGLNVAMLEIDVHLTKDQHFVVIHDETIDRTSDGKGRIADYTLSQLK SFDFGSYKDVAFKGERIPTLDEVLSLCLKYDKKLLIELKSPNLYPEIECKLLAFLEEKKVDATQVVIQSFDIECIEKLNT LGSIYELGVLCSKRNYWYKKPNFSRIAQIASYVNPNYALVTRKFVDKAHHHQLQVMPYTVNKLKTGEKLRQMGVDGLITD NPKLFIK
Sequences:
>Translated_247_residues MTLNKLKDELQIVSHRGLPSDFPENTMVGYREVMGLNVAMLEIDVHLTKDQHFVVIHDETIDRTSDGKGRIADYTLSQLK SFDFGSYKDVAFKGERIPTLDEVLSLCLKYDKKLLIELKSPNLYPEIECKLLAFLEEKKVDATQVVIQSFDIECIEKLNT LGSIYELGVLCSKRNYWYKKPNFSRIAQIASYVNPNYALVTRKFVDKAHHHQLQVMPYTVNKLKTGEKLRQMGVDGLITD NPKLFIK >Mature_246_residues TLNKLKDELQIVSHRGLPSDFPENTMVGYREVMGLNVAMLEIDVHLTKDQHFVVIHDETIDRTSDGKGRIADYTLSQLKS FDFGSYKDVAFKGERIPTLDEVLSLCLKYDKKLLIELKSPNLYPEIECKLLAFLEEKKVDATQVVIQSFDIECIEKLNTL GSIYELGVLCSKRNYWYKKPNFSRIAQIASYVNPNYALVTRKFVDKAHHHQLQVMPYTVNKLKTGEKLRQMGVDGLITDN PKLFIK
Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]
COG id: COG0584
COG function: function code C; Glycerophosphoryl diester phosphodiesterase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GDPD domain [H]
Homologues:
Organism=Homo sapiens, GI7706617, Length=118, Percent_Identity=33.0508474576271, Blast_Score=84, Evalue=1e-16, Organism=Escherichia coli, GI1789858, Length=232, Percent_Identity=28.0172413793103, Blast_Score=93, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17542344, Length=120, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17561436, Length=173, Percent_Identity=26.0115606936416, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004129 - InterPro: IPR017946 [H]
Pfam domain/function: PF03009 GDPD [H]
EC number: =3.1.4.46 [H]
Molecular weight: Translated: 28405; Mature: 28274
Theoretical pI: Translated: 7.98; Mature: 7.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLNKLKDELQIVSHRGLPSDFPENTMVGYREVMGLNVAMLEIDVHLTKDQHFVVIHDET CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCEEEEEEEEEEEECCCEEEEEECCC IDRTSDGKGRIADYTLSQLKSFDFGSYKDVAFKGERIPTLDEVLSLCLKYDKKLLIELKS CCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECC PNLYPEIECKLLAFLEEKKVDATQVVIQSFDIECIEKLNTLGSIYELGVLCSKRNYWYKK CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEECC PNFSRIAQIASYVNPNYALVTRKFVDKAHHHQLQVMPYTVNKLKTGEKLRQMGVDGLITD CCHHHHHHHHHHCCCCCEEEEHHHHHHHHCCEEEEEEEEHHHHHHHHHHHHCCCCCEEEC NPKLFIK CCEEEEC >Mature Secondary Structure TLNKLKDELQIVSHRGLPSDFPENTMVGYREVMGLNVAMLEIDVHLTKDQHFVVIHDET CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCEEEEEEEEEEEECCCEEEEEECCC IDRTSDGKGRIADYTLSQLKSFDFGSYKDVAFKGERIPTLDEVLSLCLKYDKKLLIELKS CCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECC PNLYPEIECKLLAFLEEKKVDATQVVIQSFDIECIEKLNTLGSIYELGVLCSKRNYWYKK CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEECC PNFSRIAQIASYVNPNYALVTRKFVDKAHHHQLQVMPYTVNKLKTGEKLRQMGVDGLITD CCHHHHHHHHHHCCCCCEEEEHHHHHHHHCCEEEEEEEEHHHHHHHHHHHHCCCCCEEEC NPKLFIK CCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]