Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
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Accession | NC_002951 |
Length | 2,809,422 |
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The map label for this gene is comEB [H]
Identifier: 57651981
GI number: 57651981
Start: 1677599
End: 1678030
Strand: Reverse
Name: comEB [H]
Synonym: SACOL1645
Alternate gene names: 57651981
Gene position: 1678030-1677599 (Counterclockwise)
Preceding gene: 57651982
Following gene: 57651980
Centisome position: 59.73
GC content: 33.56
Gene sequence:
>432_bases ATGGCACAAAGTCATTTGCTAGCATTACGTTCAACTTGTCAAAGATTATCTGTAGGTGCAACGATTGTTAAGGATAATCG TATTATTGCTGGTGGTTATAATGGCTCTGTAGCTGGCGAGGTGCATTGTATAGATGAAGGATGTTTAATTGAAGATGGAC ATTGTATCAGAACGATACATGCAGAAATGAATGCTTTATTACAATGTGCAAAACAAGGTGTATCTACTGAAGGTGCAACA ATCTATGTTACTCATTTTCCATGCCTAAATTGTACAAAGTCAATTATTCAAGCAGGTATAAAGCGTATCTACTATGCAGA AGATTATCATAACCATGAATATGCAACTAAATTACTCAAACAATCTGGTATTGAATTTAAAAAAATTCCATTTTCACCAG AATATGTTGCTAAATATCTGACTAAAGGTTAA
Upstream 100 bases:
>100_bases TTTATTTTTTGTGATTAATCTTATATTATTAGAAAATGTTACTAAATTTTAAGTATGGAAGGTGAACATCTTGGAAAGAA TCAAATGGGAAGAATATTTT
Downstream 100 bases:
>100_bases TGTTTTGCTGTTTGTCGCGTTATCAATGATTGTAGGAGTGCTTTGGAATTCTAGCAAAGTGCTCTCTACATTTCTTTTCA TTTTACTTTTGTATATTACT
Product: comE operon protein 2
Products: dUMP; NH3
Alternate protein names: NA
Number of amino acids: Translated: 143; Mature: 142
Protein sequence:
>143_residues MAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGAT IYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
Sequences:
>Translated_143_residues MAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGAT IYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG >Mature_142_residues AQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATI YVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
Specific function: Dispensable for transformability [H]
COG id: COG2131
COG function: function code F; Deoxycytidylate deaminase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]
Homologues:
Organism=Homo sapiens, GI61742821, Length=141, Percent_Identity=36.1702127659575, Blast_Score=71, Evalue=3e-13, Organism=Homo sapiens, GI61742819, Length=143, Percent_Identity=37.0629370629371, Blast_Score=71, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17557019, Length=136, Percent_Identity=31.6176470588235, Blast_Score=67, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6321938, Length=140, Percent_Identity=37.1428571428571, Blast_Score=91, Evalue=9e-20, Organism=Drosophila melanogaster, GI24667298, Length=149, Percent_Identity=36.241610738255, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI24667302, Length=149, Percent_Identity=36.241610738255, Blast_Score=68, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016192 - InterPro: IPR002125 - InterPro: IPR013404 - InterPro: IPR015517 - InterPro: IPR016193 - InterPro: IPR016473 [H]
Pfam domain/function: PF00383 dCMP_cyt_deam_1 [H]
EC number: 3.5.4.12
Molecular weight: Translated: 15763; Mature: 15632
Theoretical pI: Translated: 8.06; Mature: 8.06
Prosite motif: PS00903 CYT_DCMP_DEAMINASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 4.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIH CCCHHHHHHHHHHHHHHCCEEEEECCEEEECCCCCCCCCEEEEECCCCEEECCCEEEHHH AEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLK HHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHEEHHCCCCCHHHHHHHHH QSGIEFKKIPFSPEYVAKYLTKG HCCCCEEECCCCHHHHHHHHHCC >Mature Secondary Structure AQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIH CCHHHHHHHHHHHHHHCCEEEEECCEEEECCCCCCCCCEEEEECCCCEEECCCEEEHHH AEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLK HHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHEEHHCCCCCHHHHHHHHH QSGIEFKKIPFSPEYVAKYLTKG HCCCCEEECCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: dCMP; H2O
Specific reaction: dCMP + H2O = dUMP + NH3
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]