Definition Staphylococcus aureus subsp. aureus COL chromosome, complete genome.
Accession NC_002951
Length 2,809,422

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The map label for this gene is comEB [H]

Identifier: 57651981

GI number: 57651981

Start: 1677599

End: 1678030

Strand: Reverse

Name: comEB [H]

Synonym: SACOL1645

Alternate gene names: 57651981

Gene position: 1678030-1677599 (Counterclockwise)

Preceding gene: 57651982

Following gene: 57651980

Centisome position: 59.73

GC content: 33.56

Gene sequence:

>432_bases
ATGGCACAAAGTCATTTGCTAGCATTACGTTCAACTTGTCAAAGATTATCTGTAGGTGCAACGATTGTTAAGGATAATCG
TATTATTGCTGGTGGTTATAATGGCTCTGTAGCTGGCGAGGTGCATTGTATAGATGAAGGATGTTTAATTGAAGATGGAC
ATTGTATCAGAACGATACATGCAGAAATGAATGCTTTATTACAATGTGCAAAACAAGGTGTATCTACTGAAGGTGCAACA
ATCTATGTTACTCATTTTCCATGCCTAAATTGTACAAAGTCAATTATTCAAGCAGGTATAAAGCGTATCTACTATGCAGA
AGATTATCATAACCATGAATATGCAACTAAATTACTCAAACAATCTGGTATTGAATTTAAAAAAATTCCATTTTCACCAG
AATATGTTGCTAAATATCTGACTAAAGGTTAA

Upstream 100 bases:

>100_bases
TTTATTTTTTGTGATTAATCTTATATTATTAGAAAATGTTACTAAATTTTAAGTATGGAAGGTGAACATCTTGGAAAGAA
TCAAATGGGAAGAATATTTT

Downstream 100 bases:

>100_bases
TGTTTTGCTGTTTGTCGCGTTATCAATGATTGTAGGAGTGCTTTGGAATTCTAGCAAAGTGCTCTCTACATTTCTTTTCA
TTTTACTTTTGTATATTACT

Product: comE operon protein 2

Products: dUMP; NH3

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGAT
IYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG

Sequences:

>Translated_143_residues
MAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGAT
IYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>Mature_142_residues
AQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATI
YVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG

Specific function: Dispensable for transformability [H]

COG id: COG2131

COG function: function code F; Deoxycytidylate deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]

Homologues:

Organism=Homo sapiens, GI61742821, Length=141, Percent_Identity=36.1702127659575, Blast_Score=71, Evalue=3e-13,
Organism=Homo sapiens, GI61742819, Length=143, Percent_Identity=37.0629370629371, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17557019, Length=136, Percent_Identity=31.6176470588235, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6321938, Length=140, Percent_Identity=37.1428571428571, Blast_Score=91, Evalue=9e-20,
Organism=Drosophila melanogaster, GI24667298, Length=149, Percent_Identity=36.241610738255, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24667302, Length=149, Percent_Identity=36.241610738255, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR013404
- InterPro:   IPR015517
- InterPro:   IPR016193
- InterPro:   IPR016473 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1 [H]

EC number: 3.5.4.12

Molecular weight: Translated: 15763; Mature: 15632

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
4.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIH
CCCHHHHHHHHHHHHHHCCEEEEECCEEEECCCCCCCCCEEEEECCCCEEECCCEEEHHH
AEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLK
HHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHEEHHCCCCCHHHHHHHHH
QSGIEFKKIPFSPEYVAKYLTKG
HCCCCEEECCCCHHHHHHHHHCC
>Mature Secondary Structure 
AQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIH
CCHHHHHHHHHHHHHHCCEEEEECCEEEECCCCCCCCCEEEEECCCCEEECCCEEEHHH
AEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLK
HHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHEEHHCCCCCHHHHHHHHH
QSGIEFKKIPFSPEYVAKYLTKG
HCCCCEEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: dCMP; H2O

Specific reaction: dCMP + H2O = dUMP + NH3

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7968523; 8969508; 9384377 [H]