Click here to switch to the map view.

The map label for this gene is 57651845

Identifier: 57651845

GI number: 57651845

Start: 1308299

End: 1309870

Strand: Direct

Name: 57651845

Synonym: SACOL1294

Alternate gene names: NA

Gene position: 1308299-1309870 (Clockwise)

Preceding gene: 57651844

Following gene: 57651846

Centisome position: 46.57

GC content: 33.72

Gene sequence:

>1572_bases
ATGTTTATGTTAGATGCTGGACTTATGTTTCCAGAAGACGAAATGCTAGGTATTGATATTGTTATACCAGACATTTCATA
CGTACTTGAAAATAAAGATAAATTGAAGGGTATATTCCTTACACACGGACATGAGCACGCGATTGGTGCAGTGAGTTATG
TTTTAGAACAATTAGATGCACCAGTATATGGATCTAAATTGACAATAGCGTTAATTAAAGAAAATATGAAAGCCCGTAAT
ATTGATAAAAAAGTTCGCTACTATACAGTTAATAATGATTCAATTATGAGATTCAAAAACGTGAATATTAGTTTCTTTAA
TACGACACACAGTATTCCTGATAGTTTAGGTGTTTGTATTCACACTTCATATGGTGCCATTGTGTATACAGGTGAATTTA
AGTTTGACCAAAGTTTACATGGACATTATGCACCAGATATTAAACGTATGGCAGAGATTGGTGAAGAAGGCGTATTTGTC
TTAATCAGTGATTCTACTGAGGCAGAGAAACCTGGATATAATACTCCGGAAAATGTGATTGAACATCATATGTATGATGC
TTTTGCAAAAGTGCGAGGTCGCTTGATAGTTTCATGTTATGCTTCGAACTTTATACGTATTCAGCAAGTTTTAAATATTG
CTAGCAAGCTAAATCGTAAAGTGTCATTTTTAGGAAGATCACTTGAAAGTTCATTTAATATTGCTCGTAAAATGGGGTAT
TTCGACATTCCTAAAGATTTGCTAATTCCTATAACAGAAGTTGATAATTATCCTAAAAATGAAGTGATAATTATAGCTAC
TGGTATGCAAGGAGAACCTGTAGAAGCCTTAAGTCAAATGGCGCAACATAAGCATAAAATTATGAATATCGAAGAAGGCG
ATTCTGTATTTTTAGCAATTACGGCTTCTGCTAATATGGAAGTTATCATTGCGAATACATTAAATGAGCTTGTACGTGCT
GGCGCACATATTATTCCAAATAACAAAAAGATTCATGCTTCAAGTCATGGTTGCATGGAAGAATTAAAAATGATGATTAA
TATTATGAAACCTGAATACTTTATTCCTGTACAAGGTGAATTTAAAATGCAGATAGCACATGCGAAGCTAGCAGCTGAAG
CAGGTGTTGCACCAGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAACGGTAAAGATATGATATTAAAT
GAAAAGGTAAATTCAGGAAATATTTTAATAGATGGCATTGGTATTGGGGATGTAGGAAATATCGTGTTGAGAGACCGTCA
TCTTTTAGCAGAAGATGGTATCTTTATTGCTGTTGTAACGTTAGATCCTAAAAATAGACGTATAGCTGCGGGACCTGAAA
TTCAATCTCGTGGGTTTGTATATGTACGTGAAAGTGAAGACTTATTACGTGAAGCAGAAGAGAAAGTACGTGAAATAGTA
GAGGCTGGTTTACAAGAAAAACGCATAGAATGGTCTGAAATTAAACAAAATATGCGTGATCAAATTAGTAAACTATTATT
CGAAAGTACAAAACGTCGTCCTATGATTATTCCAGTAATTTCTGAAATTTAA

Upstream 100 bases:

>100_bases
GAGTTTAATAAAGAAAAAGAATAAAGATATTCGCATTATACCATTAGGCGGTGTTGGCGAAATTGCTAAAAATATGTATA
TCGTTGAAGTAGACGATGAA

Downstream 100 bases:

>100_bases
TCAAAAAGTCATTAACATAAAAGAGGTCAGAACAAGTCACTGAAATATAATGGTTGTCATGGACAATTTACTTATATTTT
ATGATGGTCAATTGAAGGGG

Product: metallo-beta-lactamase family protein

Products: NA

Alternate protein names: RNase J2

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MFMLDAGLMFPEDEMLGIDIVIPDISYVLENKDKLKGIFLTHGHEHAIGAVSYVLEQLDAPVYGSKLTIALIKENMKARN
IDKKVRYYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGAIVYTGEFKFDQSLHGHYAPDIKRMAEIGEEGVFV
LISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIRIQQVLNIASKLNRKVSFLGRSLESSFNIARKMGY
FDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAITASANMEVIIANTLNELVRA
GAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGVAPEKIFLVEKGDVINYNGKDMILN
EKVNSGNILIDGIGIGDVGNIVLRDRHLLAEDGIFIAVVTLDPKNRRIAAGPEIQSRGFVYVRESEDLLREAEEKVREIV
EAGLQEKRIEWSEIKQNMRDQISKLLFESTKRRPMIIPVISEI

Sequences:

>Translated_523_residues
MFMLDAGLMFPEDEMLGIDIVIPDISYVLENKDKLKGIFLTHGHEHAIGAVSYVLEQLDAPVYGSKLTIALIKENMKARN
IDKKVRYYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGAIVYTGEFKFDQSLHGHYAPDIKRMAEIGEEGVFV
LISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIRIQQVLNIASKLNRKVSFLGRSLESSFNIARKMGY
FDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAITASANMEVIIANTLNELVRA
GAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGVAPEKIFLVEKGDVINYNGKDMILN
EKVNSGNILIDGIGIGDVGNIVLRDRHLLAEDGIFIAVVTLDPKNRRIAAGPEIQSRGFVYVRESEDLLREAEEKVREIV
EAGLQEKRIEWSEIKQNMRDQISKLLFESTKRRPMIIPVISEI
>Mature_523_residues
MFMLDAGLMFPEDEMLGIDIVIPDISYVLENKDKLKGIFLTHGHEHAIGAVSYVLEQLDAPVYGSKLTIALIKENMKARN
IDKKVRYYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGAIVYTGEFKFDQSLHGHYAPDIKRMAEIGEEGVFV
LISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIRIQQVLNIASKLNRKVSFLGRSLESSFNIARKMGY
FDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAITASANMEVIIANTLNELVRA
GAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGVAPEKIFLVEKGDVINYNGKDMILN
EKVNSGNILIDGIGIGDVGNIVLRDRHLLAEDGIFIAVVTLDPKNRRIAAGPEIQSRGFVYVRESEDLLREAEEKVREIV
EAGLQEKRIEWSEIKQNMRDQISKLLFESTKRRPMIIPVISEI

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNJ2_STAA3 (Q2FHG3)

Other databases:

- EMBL:   CP000255
- RefSeq:   YP_493865.1
- ProteinModelPortal:   Q2FHG3
- SMR:   Q2FHG3
- STRING:   Q2FHG3
- EnsemblBacteria:   EBSTAT00000036949
- GeneID:   3913610
- GenomeReviews:   CP000255_GR
- KEGG:   saa:SAUSA300_1168
- eggNOG:   COG0595
- GeneTree:   EBGT00050000024729
- HOGENOM:   HBG497378
- ProtClustDB:   CLSK885243
- GO:   GO:0005737
- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- SMART:   SM00849
- TIGRFAMs:   TIGR00649

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL

EC number: NA

Molecular weight: Translated: 58792; Mature: 58792

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMLDAGLMFPEDEMLGIDIVIPDISYVLENKDKLKGIFLTHGHEHAIGAVSYVLEQLDA
CEEEECCCCCCCCCEEEEEEEECCHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC
PVYGSKLTIALIKENMKARNIDKKVRYYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCI
CCCCCEEEEEEEECCCHHCCCCCEEEEEEECCCCEEEEEECEEEEEECCCCCCCCCCEEE
HTSYGAIVYTGEFKFDQSLHGHYAPDIKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVI
EECCCEEEEEECEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHH
EHHMYDAFAKVRGRLIVSCYASNFIRIQQVLNIASKLNRKVSFLGRSLESSFNIARKMGY
HHHHHHHHHHHCCCEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAI
CCCCHHHEEEEHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
TASANMEVIIANTLNELVRAGAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQGE
EECCCEEEEEHHHHHHHHHCCCEECCCCCEEECCCCHHHHHHHHHHHHCCCCEEEECCCC
FKMQIAHAKLAAEAGVAPEKIFLVEKGDVINYNGKDMILNEKVNSGNILIDGIGIGDVGN
EEEEEEHHHHHHHCCCCCCEEEEEECCCEEEECCCEEEEECCCCCCCEEEEEECCCCCCC
IVLRDRHLLAEDGIFIAVVTLDPKNRRIAAGPEIQSRGFVYVRESEDLLREAEEKVREIV
EEEECCEEEECCCEEEEEEEECCCCCEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHH
EAGLQEKRIEWSEIKQNMRDQISKLLFESTKRRPMIIPVISEI
HCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
>Mature Secondary Structure
MFMLDAGLMFPEDEMLGIDIVIPDISYVLENKDKLKGIFLTHGHEHAIGAVSYVLEQLDA
CEEEECCCCCCCCCEEEEEEEECCHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC
PVYGSKLTIALIKENMKARNIDKKVRYYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCI
CCCCCEEEEEEEECCCHHCCCCCEEEEEEECCCCEEEEEECEEEEEECCCCCCCCCCEEE
HTSYGAIVYTGEFKFDQSLHGHYAPDIKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVI
EECCCEEEEEECEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHH
EHHMYDAFAKVRGRLIVSCYASNFIRIQQVLNIASKLNRKVSFLGRSLESSFNIARKMGY
HHHHHHHHHHHCCCEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAI
CCCCHHHEEEEHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
TASANMEVIIANTLNELVRAGAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQGE
EECCCEEEEEHHHHHHHHHCCCEECCCCCEEECCCCHHHHHHHHHHHHCCCCEEEECCCC
FKMQIAHAKLAAEAGVAPEKIFLVEKGDVINYNGKDMILNEKVNSGNILIDGIGIGDVGN
EEEEEEHHHHHHHCCCCCCEEEEEECCCEEEECCCEEEEECCCCCCCEEEEEECCCCCCC
IVLRDRHLLAEDGIFIAVVTLDPKNRRIAAGPEIQSRGFVYVRESEDLLREAEEKVREIV
EEEECCEEEECCCEEEEEEEECCCCCEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHH
EAGLQEKRIEWSEIKQNMRDQISKLLFESTKRRPMIIPVISEI
HCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA