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The map label for this gene is gid

Identifier: 57651820

GI number: 57651820

Start: 1278815

End: 1280122

Strand: Direct

Name: gid

Synonym: SACOL1268

Alternate gene names: 57651820

Gene position: 1278815-1280122 (Clockwise)

Preceding gene: 57651819

Following gene: 57651821

Centisome position: 45.52

GC content: 35.78

Gene sequence:

>1308_bases
ATGACTCAAACTGTAAATGTAATAGGTGCTGGTCTTGCCGGTTCAGAAGCGGCATATCAATTAGCTGAAAGAGGAATTAA
AGTTAATCTAATAGAGATGAGACCTGTTAAACAAACACCAGCGCACCATACTGATAAATTTGCGGAACTTGTATGTTCCA
ATTCATTACGCGGAAATGCTTTAACTAATGGTGTGGGTGTTTTAAAAGAAGAAATGAGAAGATTGAATTCTATAATTATT
GAAGCGGCTGATAAGGCACGAGTTCCAGCTGGTGGTGCATTAGCAGTTGATAGACACGATTTTTCAGGTTATATTACTGA
AACACTTAAAAATCATGAAAATATCACAGTTATTAATGAAGAAATTAATGCCATTCCAGATGGATACACAATTATCGCAA
CAGGACCACTTACTACAGAAACCCTTGCGCAAGAAATAGTGGACATTACTGGTAAAGATCAACTTTATTTCTATGATGCG
GCTGCTCCAATTATTGAAAAAGAATCTATTGATATGGATAAAGTTTACTTAAAGTCCCGTTATGATAAAGGTGAAGCTGC
ATATTTAAACTGTCCTATGACTGAGGATGAATTTAATCGCTTTTATGATGCAGTATTAGAAGCTGAAGTTGCGCCTGTAA
ATTCATTTGAAAAAGAAAAATATTTCGAGGGTTGTATGCCTTTTGAAGTAATGGCAGAACGCGGACGCAAGACATTACTA
TTTGGACCAATGAAACCAGTAGGATTAGAAGATCCAAAGACTGGGAAACGTCCTTATGCGGTGGTTCAATTAAGACAAGA
TGACGCTGCTGGTACACTCTACAATATTGTTGGCTTCCAAACGCATTTAAAATGGGGAGCTCAAAAAGAAGTCATTAAAT
TAATTCCAGGCTTAGAAAATGTTGATATTGTTAGATATGGTGTGATGCATAGAAATACCTTCATTAATTCACCGGACGTA
TTAAACGAGAAATATGAATTGATTTCACAACCAAACATACAGTTTGCGGGACAAATGACTGGTGTTGAAGGTTATGTAGA
AAGCGCAGCTAGCGGCTTAGTTGCAGGTATCAATCTTGCGCATAAAATATTAGGCAAGGGTGAGGTAGTATTTCCGAGAG
AAACAATGATTGGAAGTATGGCTTACTATATTTCTCATGCTAAAAACAATAAGAATTTCCAACCTATGAATGCTAACTTC
GGGTTATTACCATCTTTAGAAACTAGAATTAAAGATAAAAAAGAACGCTATGAAGCACAAGCTAATAGAGCTTTGGATTA
CTTAGAAAATTTCAAAAAAACTTTATAA

Upstream 100 bases:

>100_bases
TTATTTTAAAGATAGTAAAGGATTAATCTAAATAAGTGCGGATAATATAAACATAACAACATAATTAAAAGACATAAATG
ACAATAAAAGGAGTATAGAA

Downstream 100 bases:

>100_bases
AATAGTTAGAAAGACTAGATATGCTATTCATTCTTAAGTCATCAACGAGTAAGTAATGACTTTCTAAATGGAAAATACTT
ATCCTAGTCTTTTTAATTTT

Product: tRNA (uracil-5-)-methyltransferase Gid

Products: NA

Alternate protein names: Folate-dependent tRNA (uracil-5-)-methyltransferase; Folate-dependent tRNA(M-5-U54)-methyltransferase

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MTQTVNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNGVGVLKEEMRRLNSIII
EAADKARVPAGGALAVDRHDFSGYITETLKNHENITVINEEINAIPDGYTIIATGPLTTETLAQEIVDITGKDQLYFYDA
AAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKEKYFEGCMPFEVMAERGRKTLL
FGPMKPVGLEDPKTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHRNTFINSPDV
LNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVVFPRETMIGSMAYYISHAKNNKNFQPMNANF
GLLPSLETRIKDKKERYEAQANRALDYLENFKKTL

Sequences:

>Translated_435_residues
MTQTVNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNGVGVLKEEMRRLNSIII
EAADKARVPAGGALAVDRHDFSGYITETLKNHENITVINEEINAIPDGYTIIATGPLTTETLAQEIVDITGKDQLYFYDA
AAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKEKYFEGCMPFEVMAERGRKTLL
FGPMKPVGLEDPKTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHRNTFINSPDV
LNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVVFPRETMIGSMAYYISHAKNNKNFQPMNANF
GLLPSLETRIKDKKERYEAQANRALDYLENFKKTL
>Mature_434_residues
TQTVNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNGVGVLKEEMRRLNSIIIE
AADKARVPAGGALAVDRHDFSGYITETLKNHENITVINEEINAIPDGYTIIATGPLTTETLAQEIVDITGKDQLYFYDAA
APIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKEKYFEGCMPFEVMAERGRKTLLF
GPMKPVGLEDPKTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHRNTFINSPDVL
NEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVVFPRETMIGSMAYYISHAKNNKNFQPMNANFG
LLPSLETRIKDKKERYEAQANRALDYLENFKKTL

Specific function: Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs

COG id: COG1206

COG function: function code J; NAD(FAD)-utilizing enzyme possibly involved in translation

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MnmG family. TrmFO subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRMFO_STAA1 (A7X1M6)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001441831.1
- ProteinModelPortal:   A7X1M6
- STRING:   A7X1M6
- EnsemblBacteria:   EBSTAT00000004116
- GeneID:   5560778
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_1241
- eggNOG:   COG1206
- GeneTree:   EBGT00050000025123
- HOGENOM:   HBG285041
- OMA:   FEGCLPI
- ProtClustDB:   PRK05335
- BioCyc:   SAUR418127:SAHV_1241-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01037
- InterPro:   IPR004417
- InterPro:   IPR002218
- InterPro:   IPR020595
- TIGRFAMs:   TIGR00137

Pfam domain/function: PF01134 GIDA

EC number: =2.1.1.74

Molecular weight: Translated: 48372; Mature: 48241

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS01280 GIDA_1; PS01281 GIDA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTVNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNA
CCCEEEEEECCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCC
LTNGVGVLKEEMRRLNSIIIEAADKARVPAGGALAVDRHDFSGYITETLKNHENITVINE
HHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCEEEEECCCCCHHHHHHHCCCCCEEEECC
EINAIPDGYTIIATGPLTTETLAQEIVDITGKDQLYFYDAAAPIIEKESIDMDKVYLKSR
HHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHC
YDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKEKYFEGCMPFEVMAERGRKTLL
CCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHCCCEEEE
FGPMKPVGLEDPKTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLEN
ECCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
VDIVRYGVMHRNTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLA
CCEEEEEHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
HKILGKGEVVFPRETMIGSMAYYISHAKNNKNFQPMNANFGLLPSLETRIKDKKERYEAQ
HHHHCCCCEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
ANRALDYLENFKKTL
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
TQTVNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNA
CCEEEEEECCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCC
LTNGVGVLKEEMRRLNSIIIEAADKARVPAGGALAVDRHDFSGYITETLKNHENITVINE
HHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCEEEEECCCCCHHHHHHHCCCCCEEEECC
EINAIPDGYTIIATGPLTTETLAQEIVDITGKDQLYFYDAAAPIIEKESIDMDKVYLKSR
HHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHC
YDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKEKYFEGCMPFEVMAERGRKTLL
CCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHCCCEEEE
FGPMKPVGLEDPKTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLEN
ECCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
VDIVRYGVMHRNTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLA
CCEEEEEHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
HKILGKGEVVFPRETMIGSMAYYISHAKNNKNFQPMNANFGLLPSLETRIKDKKERYEAQ
HHHHCCCCEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
ANRALDYLENFKKTL
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA