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The map label for this gene is ykoE [H]

Identifier: 57651686

GI number: 57651686

Start: 1096635

End: 1097210

Strand: Reverse

Name: ykoE [H]

Synonym: SACOL1086

Alternate gene names: 57651686

Gene position: 1097210-1096635 (Counterclockwise)

Preceding gene: 57651687

Following gene: 57651685

Centisome position: 39.05

GC content: 37.15

Gene sequence:

>576_bases
ATGTCAAAAGGTTTAAAGCTATCTGAAATACTAGTAACCGTACTTATTTCAGTAGTATTCGCAGTTATTTACAATTTATG
GTGGTTTGTTTACAATGGTGTGCAAGCTACAGGCCTTCACCTCGAACAATTAACAAACGGGGTTTGGTTCATGGCAGCGA
TTGTCTGCTATCTAATTATTCCAAAACCAGGTATTGCTTTACTGGCTGAATTTGCTGCAGGTGCCGGCGAAACTATCATT
ATGGGTCGTTTCGATATTCCGACAATCGTTTACGCTTTTATACAAGGTTTAGCGTGTGAACTTGTCTTTGCAATTTTTAA
ATATCAATCACGTTCAGTTATGGTAGCTATGTTAGCAGGTTTTTGTACAGCAATCGCGGCTTTCCCGATAGATTATTTCT
ATGGTTATTTAAATGAAGTTGCAGGTTGGAACTTAACATTATTCATCGTATTTAGATTAATTAGTGGTGCAGTAGTCGCC
GGCGTCCTATCTTACCTTTTAGTAAAAGCTTTAGATAAGACAGGCGTAACAAAATTATTTAGACCAGCTGCTAAAGAAGA
TTACGACAACTTATAA

Upstream 100 bases:

>100_bases
GTAGGAAAGTGTTACTATACATATGTTTTACTAATATATATTGTGAACGCATAACTTTCCTATGGATGGTTGTGCGTTTT
TTTATTAGGAGGATGTAAAA

Downstream 100 bases:

>100_bases
GAGGAGCATTCAGAGTGTTAAAAGTAAGTGATTTACGATTAAAATATCCAAGTGGTCAACGTAAAATTTTCGATCATTTA
AATATCACTATTCAAGACAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSKGLKLSEILVTVLISVVFAVIYNLWWFVYNGVQATGLHLEQLTNGVWFMAAIVCYLIIPKPGIALLAEFAAGAGETII
MGRFDIPTIVYAFIQGLACELVFAIFKYQSRSVMVAMLAGFCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVA
GVLSYLLVKALDKTGVTKLFRPAAKEDYDNL

Sequences:

>Translated_191_residues
MSKGLKLSEILVTVLISVVFAVIYNLWWFVYNGVQATGLHLEQLTNGVWFMAAIVCYLIIPKPGIALLAEFAAGAGETII
MGRFDIPTIVYAFIQGLACELVFAIFKYQSRSVMVAMLAGFCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVA
GVLSYLLVKALDKTGVTKLFRPAAKEDYDNL
>Mature_190_residues
SKGLKLSEILVTVLISVVFAVIYNLWWFVYNGVQATGLHLEQLTNGVWFMAAIVCYLIIPKPGIALLAEFAAGAGETIIM
GRFDIPTIVYAFIQGLACELVFAIFKYQSRSVMVAMLAGFCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVAG
VLSYLLVKALDKTGVTKLFRPAAKEDYDNL

Specific function: Part of the ABC transporter complex ykoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG4721

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017195 [H]

Pfam domain/function: PF09819 ABC_cobalt [H]

EC number: NA

Molecular weight: Translated: 21002; Mature: 20871

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGLKLSEILVTVLISVVFAVIYNLWWFVYNGVQATGLHLEQLTNGVWFMAAIVCYLII
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
PKPGIALLAEFAAGAGETIIMGRFDIPTIVYAFIQGLACELVFAIFKYQSRSVMVAMLAG
CCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
FCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVAGVLSYLLVKALDKTGVTKLF
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
RPAAKEDYDNL
HHHHHCCCCCC
>Mature Secondary Structure 
SKGLKLSEILVTVLISVVFAVIYNLWWFVYNGVQATGLHLEQLTNGVWFMAAIVCYLII
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
PKPGIALLAEFAAGAGETIIMGRFDIPTIVYAFIQGLACELVFAIFKYQSRSVMVAMLAG
CCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
FCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVAGVLSYLLVKALDKTGVTKLF
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
RPAAKEDYDNL
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]