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The map label for this gene is yddV [C]

Identifier: 57651584

GI number: 57651584

Start: 831592

End: 832662

Strand: Reverse

Name: yddV [C]

Synonym: SACOL0809

Alternate gene names: 57651584

Gene position: 832662-831592 (Counterclockwise)

Preceding gene: 57651586

Following gene: 57651583

Centisome position: 29.64

GC content: 30.53

Gene sequence:

>1071_bases
ATGTTCGAAGCATTTATATACAATATATCTGTTATAGTCGCTGGAATCTATTTATTCCATCGCTTACAGTATTCAGAAAA
CAAACGTATGGTTTTTTCTAAGGCTTATGTCACTGTTTTAATGACAATCGTATCATTATTATTATCTGTCTACCCTATCC
CTTATCGTGAAGATTATTTAATTCACTTAACATTCGTTCCTTTATTGTTTTTAGGTAGATTTACAAATATGGTCTATACA
TTATCTGCCACAGTAATTGTAGCAATTGTTGAAATTGTAGTATTTAACAACTCGATTATGTACGGTGTTACGTTGATTGT
TATTGCTGCAGTAACAAGTGCTATTGGACCATTTTTAAAACAAAATGATGTGCTATCATTATTAATACTTAATGTTGTTA
CAATAATCATTTTATTTGGTGTCGCGTTAGTGAGTCCTATTTACACACTATCGGAAGTTATCATTTTAATACCAATTTCA
TTAATTATCACTTTAGCTTCAGCGATAACATTTGTCGATATTTGGCATTTCTTCTCACTCGTAAATCGTTATGAAAACGA
AGATAAATATGATTACTTAACAGGCTTAGGTAATGTAAAAGAATTTGATAGACATTTAAATGAAATTTCACGAAAAGCTG
AAAAAGAACATCAAAGTATCGCATTATTATTAATCGATATCGATGGATTTAAAGATGTCAATGATACCTACTCACACAAA
TCAGGTGATGCTGTATTAAAACAAATGTCTCAATTACTTAAAAACTATGTGCCGAATCAATTTAAAATTTTTAGAAATGG
TGGCGAAGAGTTCTCAGTTGTCATTCACAATTATTCACTTGATCAAAGTGTTAAATTAGCTGAAAATATTCGTTCGGGTG
TTGAAAAATCATCATTCCATTTACCAAACAAAGAAGTTATTAAATTGTCAGTGTCTATCGGTGTTGGTTATTTAACAGAT
GACGATCCAAAATCACAGCGTAAAGTGTTTAAAGATGCAGACGATATGGTGCATGTAGCCAAAAATCAAGGGCGAAACAA
AGTAATGTTTAACCCTATTATCAATTTATAA

Upstream 100 bases:

>100_bases
CAAAGTCTATATCATACATTAATTTTATATGTAAACTAATGACAAATTGTAAGTTTTCACTTACAATAGCTAGTGGTCAA
TTAAAGGAGTCGATTCAGAC

Downstream 100 bases:

>100_bases
CAACGACAAAACTGTTAATCCTTTGCTATTATTAAATCATAGTATAATAGCAAAGATTAACAGTTTTTCTTATTTAAATT
TGAACCATACAAGTTCATCA

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYLIHLTFVPLLFLGRFTNMVYT
LSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLKQNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPIS
LIITLASAITFVDIWHFFSLVNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHK
SGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVGYLTD
DDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL

Sequences:

>Translated_356_residues
MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYLIHLTFVPLLFLGRFTNMVYT
LSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLKQNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPIS
LIITLASAITFVDIWHFFSLVNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHK
SGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVGYLTD
DDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL
>Mature_356_residues
MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYLIHLTFVPLLFLGRFTNMVYT
LSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLKQNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPIS
LIITLASAITFVDIWHFFSLVNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHK
SGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVGYLTD
DDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain

Homologues:

Organism=Escherichia coli, GI145693134, Length=129, Percent_Identity=38.7596899224806, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=36.8131868131868, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1787262, Length=235, Percent_Identity=29.3617021276596, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787802, Length=174, Percent_Identity=32.7586206896552, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788381, Length=184, Percent_Identity=27.7173913043478, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786584, Length=342, Percent_Identity=22.5146198830409, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87082007, Length=216, Percent_Identity=25, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=30.625, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788956, Length=159, Percent_Identity=30.188679245283, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787056, Length=239, Percent_Identity=27.6150627615063, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081974, Length=170, Percent_Identity=27.0588235294118, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y698_STAAB (Q2YSF9)

Other databases:

- EMBL:   AJ938182
- RefSeq:   YP_416191.1
- ProteinModelPortal:   Q2YSF9
- SMR:   Q2YSF9
- STRING:   Q2YSF9
- EnsemblBacteria:   EBSTAT00000012175
- GeneID:   3793909
- GenomeReviews:   AJ938182_GR
- KEGG:   sab:SAB0698c
- eggNOG:   COG2199
- GeneTree:   EBGT00050000024437
- HOGENOM:   HBG535565
- OMA:   FTAMRHA
- ProtClustDB:   CLSK884871
- BioCyc:   SAUR273036:SAB0698C-MONOMER
- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620
- SMART:   SM00267
- TIGRFAMs:   TIGR00254

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF; SSF55073 A/G_cyclase

EC number: NA

Molecular weight: Translated: 40346; Mature: 40346

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc78a268)-; HASH(0xceb7158)-; HASH(0xceb8f04)-; HASH(0xcab91b8)-; HASH(0xd564a1c)-; HASH(0xce5ea98)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
IHLTFVPLLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLK
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
QNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPISLIITLASAITFVDIWHFFSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHK
HHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCHHHCCC
SGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFH
CHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHCC
LPNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL
CCCHHEEEEEEEECEEECCCCCCHHHHHHHHCHHHHHHHHHCCCCCEEEECCCCCH
>Mature Secondary Structure
MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
IHLTFVPLLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLK
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
QNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPISLIITLASAITFVDIWHFFSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHK
HHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCHHHCCC
SGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFH
CHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHCCCHHHCC
LPNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL
CCCHHEEEEEEEECEEECCCCCCHHHHHHHHCHHHHHHHHHCCCCCEEEECCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA