Click here to switch to the map view.

The map label for this gene is int [H]

Identifier: 57651245

GI number: 57651245

Start: 354785

End: 355990

Strand: Reverse

Name: int [H]

Synonym: SACOL0318

Alternate gene names: 57651245

Gene position: 355990-354785 (Counterclockwise)

Preceding gene: 57651246

Following gene: 57651243

Centisome position: 12.67

GC content: 31.84

Gene sequence:

>1206_bases
ATGTGGTTTGAAAAATTTAAAAATAAGAACAATGAAACGAAGTATAGATACTACGAGAAATACAAAGATCCGTATACAGA
TAAATGGAAACGTGTAAGTGTTGTCTTGAATAAGAATACAAAGCAATCGCAAAAAGAGGCAATGTTTCGTTTAGAAGAAA
AAATAAAAGAAAAACTAAACAACAAGTCGTCAAGCGAATTAAAAACTTTGACTTTTCACGCGTTATTAGATGAATGGCTT
GAATATCATATAAAAACATCTGGCTTTAAAGTAACGACGCTTGATAATTTGAAAACAAGAATCAAAAACATCAAAAAGAA
CAGTTCTCAAAATTTACTTTTAAACAAAATTGATACAAAGTACATGCAAACATTTATTAACGAATTATCAAACGTATATT
CTGCAAATCAGGTAAAGCGTCAACTTGGACATATGAAAGAAGCTATTAAATACGCCGTTAAATTTTACAATTATCCAAAC
GAACACATATTAAATAGCGTCACACTACCAAAGAAGAGTAAGACGATAGAAGATATAGAAAAAGAAGAAGCGAAAATGTA
CAACTATTTAGAGATGGAACAGGTAATACAGATACGCGATTTTATACTGAACGATAATAACATGCAGTATAGAGCTCGTA
TTTTAGTTGCTGGGGCTGTAGAAGTTCAAGCTTTAACAGGTATGCGCATAGGTGAGTTATTAGCTCTCCAAGTTAAAGAT
GTTGACCTCAAAAATAAAACGATCGATATTAATGGCACTATTCACAGAATCAAATGTAATGCTGGATTTGGTCACAAAGA
TACTACGAAGACCGCAGGTTCAAAAAGAAAAATCGCCATCAATTCAAGGATAGCAAATGTATTGAAAAAAATAATGTTAG
AAAATAAAAAGATGCAACAATGGGAACCAAGCTATGTTGATAGAGGGTTTATATTCACAACTTGCCAAGGAAATCCTATG
CAAGGCAGTAGGATAAACAAACGATTGTCCTCAGCTGCAGAATCATTAAATATAAATAAAAAAGTTACTACTCACACACT
AAGGCATACACACATAAGTTTATTGGCGGAAATGAATATATCGTTAAAAGCAATTATGAAAAGAGTAGGACATACAGATG
AAAAAACGACTATAAAGGTATATACCCATGTAACAGAGAAAATGGACAGAGAGTTAGAGCAAAAATTAGAAAAACTTGTG
TACTAA

Upstream 100 bases:

>100_bases
TGGCGTCTGTATTTTATACAGGCGTCTTTTTTTATACAATTTTCATGGGTAGCCCGCCTACCCTTATTATTTTTTTGCCA
ATTTTGAGGAGGGATGTAAA

Downstream 100 bases:

>100_bases
AAGGTATCTGCCCTTTTTCTGCCCTTTTTTATTTTTAAAGACGCTACAAATCCTTTGTAACAACTGATATTAAAGGCTTT
TTAACACAAGTTAATCCCAT

Product: prophage L54a, integrase

Products: NA

Alternate protein names: Int-TnX [H]

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MWFEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLNNKSSSELKTLTFHALLDEWL
EYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTKYMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPN
EHILNSVTLPKKSKTIEDIEKEEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKD
VDLKNKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQWEPSYVDRGFIFTTCQGNPM
QGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKLV
Y

Sequences:

>Translated_401_residues
MWFEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLNNKSSSELKTLTFHALLDEWL
EYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTKYMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPN
EHILNSVTLPKKSKTIEDIEKEEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKD
VDLKNKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQWEPSYVDRGFIFTTCQGNPM
QGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKLV
Y
>Mature_401_residues
MWFEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLNNKSSSELKTLTFHALLDEWL
EYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTKYMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPN
EHILNSVTLPKKSKTIEDIEKEEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKD
VDLKNKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQWEPSYVDRGFIFTTCQGNPM
QGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKLV
Y

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46974; Mature: 46974

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWFEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
CCCHHHCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
NKSSSELKTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK
CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHH
YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHH
KEEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEHHHHCCCCHHHEEEEEEEC
VDLKNKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQ
CCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHC
WEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNI
CCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
SLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKLVY
HHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MWFEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLN
CCCHHHCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
NKSSSELKTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK
CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHH
YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHH
KEEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEHHHHCCCCHHHEEEEEEEC
VDLKNKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQ
CCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHC
WEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNI
CCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
SLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLEKLVY
HHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10532372; 11337471 [H]