Click here to switch to the map view.

The map label for this gene is yocS [H]

Identifier: 57650863

GI number: 57650863

Start: 2374307

End: 2375224

Strand: Reverse

Name: yocS [H]

Synonym: SACOL2314

Alternate gene names: 57650863

Gene position: 2375224-2374307 (Counterclockwise)

Preceding gene: 57650865

Following gene: 57650862

Centisome position: 84.54

GC content: 34.1

Gene sequence:

>918_bases
ATGTTTCAAAAATTGAGTATATTTGCCACGAAGAGTTTTTTGGTATGGATGTTAGTAGCAGCTGTTATTGGATTTATTTT
CCCACAACATGTTGCGACATTAGGTAAATGGGTACCTTATTTACTTGGTATTGTTATGTTAGGTATGGGATTAACAATTA
CACCTAATGATTTCAAAATGGTCTTTAAAGCACCTAGAGCAGTAATTATTGGTGTCTGTCTACAATTCAGTATTATGCCC
ACATTAGCATTTATAATTGCAAAGTCTTTTCATTTACCACCTGATATTGCTGTTGGCGTAATATTAGTTGGATGTTGTCC
GGGTGGGACATCAAGTAATGTAATGAGTTATTTAGCCAAAGCTAACGTAGCACTTTCTGTTTCTATTACGACGGTCTCTA
CGTTGCTAGCGCCATTCGTTACACCTGCGTTAATATATCTATTTGCAAATGAATGGTTGGAAGTATCTTTCGTGAGTATG
TTGTGGTCAGTTGTTCAAGTTGTATTAATTCCAATTGCTTTAGGTATTGTTTTGCAAATTATTAATCGTAAAATTGCTGA
AAAAGCTTCTACAGCTTTGCCAATTATATCAGTTGTTGCTATTTCATTAATTTTAGCAATAGTTGTAGGTGGCAGTAAGC
ACCAAATCTTAACTACAGGATTATTAATATTTTTAGTAGTTATTTTACATAACGTATTAGGGTATACGATTGGATATTGG
TTAGCTCGTCTTTTAAAATTAGATCGACAAGATCAAAAAGCAGTCAGTATTGAAGTTGGAATGCAGAACTCTGGTTTAGC
TGTGTCATTAGCAGCATTGCATTTTAATCCAATTGCAGCAGTACCAGGCGCAGTGTTTAGTTTCATTCATAATATAACAG
GGCCTATTTTAGCAAAGTATTGGTCAAAAAAGTTATAA

Upstream 100 bases:

>100_bases
AAGAGAATGACTAAATAATCTTAATTTTCAGAAAAGTAATTGTAACCTTACTGGTCTTATGGTAATATTTTTCAATATTA
TCGACGAGGATGTGTTAACA

Downstream 100 bases:

>100_bases
TTGCACTAATAGAATGAAGTGGTCATCGGACTATGTTAAGCTTTGATAAAGAGAAAAAATAGAGGAGTAAATATATGTAT
AGAGCAGTTATATTTGATTT

Product: sodium/bile acid symporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MFQKLSIFATKSFLVWMLVAAVIGFIFPQHVATLGKWVPYLLGIVMLGMGLTITPNDFKMVFKAPRAVIIGVCLQFSIMP
TLAFIIAKSFHLPPDIAVGVILVGCCPGGTSSNVMSYLAKANVALSVSITTVSTLLAPFVTPALIYLFANEWLEVSFVSM
LWSVVQVVLIPIALGIVLQIINRKIAEKASTALPIISVVAISLILAIVVGGSKHQILTTGLLIFLVVILHNVLGYTIGYW
LARLLKLDRQDQKAVSIEVGMQNSGLAVSLAALHFNPIAAVPGAVFSFIHNITGPILAKYWSKKL

Sequences:

>Translated_305_residues
MFQKLSIFATKSFLVWMLVAAVIGFIFPQHVATLGKWVPYLLGIVMLGMGLTITPNDFKMVFKAPRAVIIGVCLQFSIMP
TLAFIIAKSFHLPPDIAVGVILVGCCPGGTSSNVMSYLAKANVALSVSITTVSTLLAPFVTPALIYLFANEWLEVSFVSM
LWSVVQVVLIPIALGIVLQIINRKIAEKASTALPIISVVAISLILAIVVGGSKHQILTTGLLIFLVVILHNVLGYTIGYW
LARLLKLDRQDQKAVSIEVGMQNSGLAVSLAALHFNPIAAVPGAVFSFIHNITGPILAKYWSKKL
>Mature_305_residues
MFQKLSIFATKSFLVWMLVAAVIGFIFPQHVATLGKWVPYLLGIVMLGMGLTITPNDFKMVFKAPRAVIIGVCLQFSIMP
TLAFIIAKSFHLPPDIAVGVILVGCCPGGTSSNVMSYLAKANVALSVSITTVSTLLAPFVTPALIYLFANEWLEVSFVSM
LWSVVQVVLIPIALGIVLQIINRKIAEKASTALPIISVVAISLILAIVVGGSKHQILTTGLLIFLVVILHNVLGYTIGYW
LARLLKLDRQDQKAVSIEVGMQNSGLAVSLAALHFNPIAAVPGAVFSFIHNITGPILAKYWSKKL

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=245, Percent_Identity=33.8775510204082, Blast_Score=125, Evalue=4e-29,
Organism=Homo sapiens, GI4506971, Length=258, Percent_Identity=30.6201550387597, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI37537552, Length=242, Percent_Identity=25.6198347107438, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI24308414, Length=244, Percent_Identity=30.7377049180328, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI215422368, Length=245, Percent_Identity=31.4285714285714, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI215422370, Length=245, Percent_Identity=31.4285714285714, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI9790143, Length=245, Percent_Identity=31.4285714285714, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI58219066, Length=237, Percent_Identity=32.0675105485232, Blast_Score=79, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI115533076, Length=139, Percent_Identity=33.8129496402878, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 32852; Mature: 32852

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCC
>Mature Secondary Structure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HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]