Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
---|---|
Accession | NC_002951 |
Length | 2,809,422 |
Click here to switch to the map view.
The map label for this gene is secDF [H]
Identifier: 57650518
GI number: 57650518
Start: 1723742
End: 1726021
Strand: Reverse
Name: secDF [H]
Synonym: SACOL1692
Alternate gene names: 57650518
Gene position: 1726021-1723742 (Counterclockwise)
Preceding gene: 57650519
Following gene: 57650517
Centisome position: 61.44
GC content: 32.63
Gene sequence:
>2280_bases GTGAAGAAAAGTAGTAGAATAATTGCGTTCTTGCTTTTAGTCGTATTGTTGTTTGCCGGAATGGCTGCAACTTATAAAAG TGTTATAAAGAATGTCAATTTAGGACTTGATTTGCAAGGTGGATTTGAGGTGCTTTATCAAGTCGATCCTTTAAATAAAG GCGACAAAATAGATAAAAAAGCCTTACAATCAACAGCGCAAACATTAGAAAATCGTGTTAACGTTTTAGGTGTTTCGGAA CCTAAAATTCAAGTTGAAGAACCTAATAGAATTAGAGTACAACTTGCTGGTGTAACAGACCAGAATGAAGCACGTAAAAT TTTATCTTCTCAAGCTAATTTAACAATTCGCGATGCAGAAGATAAAGTAAAATTAAGCGGTTCTGATATTAAACAGGGAT CTGCCAAACAAGAATTTAAACAGGAAACAAACCAGCCTACAGTTACTTTTAAAGTAAAAGACAAAAACAAATTTAAAAAA GTAACGGAAGAAATCTCTAAGAAACGTGATAATGTCATGGTTGTTTGGTTAGATTTCAAAAAAGGTGACAGCTATAAAAA AGAAGCACAAAAGAAAAACCCTAAATTTATTTCTGCAGCAAGTGTTGATCAACCAATCAATTCTGATAGCGTAGAAATCT CGGGTGGATTTAAAGGACAAGAAGGCGTTAAAAAAGCAAAACAAATCGCCGAATTGTTAAATGCAGGTTCTTTACCAGTT GACTTGAAAGAAATTTATTCAAACTCAGTAGGTGCCCAATTTGGTCAAGATGCATTAGATAAAACTGTGTTTGCATCGTT TATTGGTGTAGCATTAATTTATTTATTCATGCTTGGATTCTACCGATTACCTGGTTTAGTAGCGATTATTGCATTGACAA CTTATATCTATCTAACGTTAGTAGCATTTAATTTCATTTCCGGGGTTCTAACTTTACCAGGATTAGCGGCGTTGGTATTA GGTGTAGGTATGGCTGTAGATGCCAATATTATCATGTATGAGCGTATTAAGGATGAACTTCGAATAGGTAGAACGATAAA GCAAGCCTTTTCTAAAGCAAACAAAAGTTCATTCCTAACAATTTTTGATTCTAACTTAACAACAGTTATCGCCGCAGCAG TATTATTCTTCTTCGGTGAAAGTTCAGTTAAAGGTTTCGCGACAATGTTATTATTAGGTATTCTAATGATCTTTGTTACA GCCGTGTTCTTATCAAGATTCTTATTATCATTACTTGTTTCATCAAATATATTCAAAAATCAATTTTGGTTATTTGGTGT TAAAAAGAATAAACGACATGATATTAATGAAGGTGTAGATGTTCATGACCTTAAAACTTCATTCGAGAAATGGAATTTTG TTAAATTAGCTAAGCCATTAATTGGAGTAAGTATTTTAATTGTAGTTGTCGGTTTAGTTATTCTTTATATCTTCAAGTTA AACTTAGGAATTGATTTCTCAAGTGGTACACGCGTAGATTTCCAATCTAAACAAGCAATTACTCAACAAAAGGTAGAGCA AGTTGTAAAAGATAGTGGACTTAAAGCGGATCAAATTCAGATCAATGGTAAAGACAATAAAGTAGCAACTGTTCAATTTA AAGACGATTTAACGCGTGCTCAAGATAATAAATTGAGTGATAATATTAAATCGAAATTCGGTGACACACCTCAAATTAAC ACTGTATCACCAATTATTGGACAGGAATTAGCAAAAAATGCAATGCTTGCATTAATCTATGCATCGATAGGTATCATCAT CTATGTATCATTACGATTTGAATGGCGCATGGGTCTTTCATCTGTATTGGCATTATTACATGATGTATTCATTATAGTAG CGATTTTCAGTTTATTTAGAATTGAAGTAGATTTAACATTTATCGCCGCTGTATTAACAATTGTCGGTTATTCAATTAAT GATACAATCGTAACGTTTGACCGTGTACGTGAAAACTTACAAAAGGTTAAAGTGATTACGACAACAGAACAAATTGATGA TATCGTTAATAGATCAATTAGACAGACAATGACACGTTCAATTAATACAGTATTAACAGTTATTGTAGTAGTAGTTGCTA TACTATTCTTCGGTGCTCCTACGATATTCAACTTTACTTTAGCATTATTTATCGGATTGATTTCTGGTGTATTCTCTTCA ATCTTCATTGCCGTTCCGCTATGGGGAATAATGAAAAAACGTCAGTTGAAAAAATCGCCGAAACACAAATTAGTTGTATA TAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAA
Upstream 100 bases:
>100_bases ATATGTATAAGGCTAATAAATTTTGTAAGAAAGATTTAACTTGCGTTATAAAATAGTATTCAAGTATTCTAAATACATAC GTAAATAATGAGGTGTTCAT
Downstream 100 bases:
>100_bases AATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGCTTTTTACTTTATTTAAATTTAACAAAATATATATA AATAAGTTCCCGCATTCATT
Product: bifunctional preprotein translocase subunit SecD/SecF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 759; Mature: 759
Protein sequence:
>759_residues MKKSSRIIAFLLLVVLLFAGMAATYKSVIKNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSE PKIQVEEPNRIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKK VTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPINSDSVEISGGFKGQEGVKKAKQIAELLNAGSLPV DLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVL GVGMAVDANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVT AVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILIVVVGLVILYIFKL NLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNKVATVQFKDDLTRAQDNKLSDNIKSKFGDTPQIN TVSPIIGQELAKNAMLALIYASIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIN DTIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPTIFNFTLALFIGLISGVFSS IFIAVPLWGIMKKRQLKKSPKHKLVVYKEKKSNDEKILV
Sequences:
>Translated_759_residues MKKSSRIIAFLLLVVLLFAGMAATYKSVIKNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSE PKIQVEEPNRIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKK VTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPINSDSVEISGGFKGQEGVKKAKQIAELLNAGSLPV DLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVL GVGMAVDANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVT AVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILIVVVGLVILYIFKL NLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNKVATVQFKDDLTRAQDNKLSDNIKSKFGDTPQIN TVSPIIGQELAKNAMLALIYASIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIN DTIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPTIFNFTLALFIGLISGVFSS IFIAVPLWGIMKKRQLKKSPKHKLVVYKEKKSNDEKILV >Mature_759_residues MKKSSRIIAFLLLVVLLFAGMAATYKSVIKNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSE PKIQVEEPNRIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKK VTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPINSDSVEISGGFKGQEGVKKAKQIAELLNAGSLPV DLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVL GVGMAVDANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVT AVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILIVVVGLVILYIFKL NLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNKVATVQFKDDLTRAQDNKLSDNIKSKFGDTPQIN TVSPIIGQELAKNAMLALIYASIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIN DTIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPTIFNFTLALFIGLISGVFSS IFIAVPLWGIMKKRQLKKSPKHKLVVYKEKKSNDEKILV
Specific function: Required for efficient translocation of secretory pre- proteins under conditions of hypersecretion but is not required for the release of mature proteins from the membrane [H]
COG id: COG0342
COG function: function code U; Preprotein translocase subunit SecD
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the secD/secF family. SecF subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786610, Length=328, Percent_Identity=30.4878048780488, Blast_Score=168, Evalue=1e-42, Organism=Escherichia coli, GI1786609, Length=389, Percent_Identity=30.0771208226221, Blast_Score=161, Evalue=2e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005791 - InterPro: IPR022813 - InterPro: IPR022646 - InterPro: IPR022645 - InterPro: IPR005665 [H]
Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]
EC number: NA
Molecular weight: Translated: 84255; Mature: 84255
Theoretical pI: Translated: 10.32; Mature: 10.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKSSRIIAFLLLVVLLFAGMAATYKSVIKNVNLGLDLQGGFEVLYQVDPLNKGDKIDKK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCHHHHH ALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQANLTIRDAE HHHHHHHHHHHCCCEEECCCCCEEECCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCC DKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFK CCEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECC KGDSYKKEAQKKNPKFISAASVDQPINSDSVEISGGFKGQEGVKKAKQIAELLNAGSLPV CCCCHHHHHHHCCCCEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCE DLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLVAIIALTTYIYLTL EHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIKQAFSKANKSSFLT HHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE IFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKN EECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC QFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILIVVVGLVILYIFKL CEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNKVATVQFKDDLTRA HCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEHHHHHHH QDNKLSDNIKSKFGDTPQINTVSPIIGQELAKNAMLALIYASIGIIIYVSLRFEWRMGLS CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHCCHH SVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSINDTIVTFDRVRENLQKVKVIT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHEEEE TTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPTIFNFTLALFIGLISGVFSS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH IFIAVPLWGIMKKRQLKKSPKHKLVVYKEKKSNDEKILV HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC >Mature Secondary Structure MKKSSRIIAFLLLVVLLFAGMAATYKSVIKNVNLGLDLQGGFEVLYQVDPLNKGDKIDKK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCHHHHH ALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQANLTIRDAE HHHHHHHHHHHCCCEEECCCCCEEECCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCC DKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFK CCEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECC KGDSYKKEAQKKNPKFISAASVDQPINSDSVEISGGFKGQEGVKKAKQIAELLNAGSLPV CCCCHHHHHHHCCCCEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCE DLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLVAIIALTTYIYLTL EHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIKQAFSKANKSSFLT HHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE IFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKN EECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC QFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILIVVVGLVILYIFKL CEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNKVATVQFKDDLTRA HCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEHHHHHHH QDNKLSDNIKSKFGDTPQINTVSPIIGQELAKNAMLALIYASIGIIIYVSLRFEWRMGLS CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHCCHH SVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSINDTIVTFDRVRENLQKVKVIT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHEEEE TTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPTIFNFTLALFIGLISGVFSS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH IFIAVPLWGIMKKRQLKKSPKHKLVVYKEKKSNDEKILV HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9694879; 9384377 [H]