Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
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Accession | NC_002951 |
Length | 2,809,422 |
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The map label for this gene is yrvN [H]
Identifier: 57650509
GI number: 57650509
Start: 1710599
End: 1711873
Strand: Direct
Name: yrvN [H]
Synonym: SACOL1682
Alternate gene names: 57650509
Gene position: 1710599-1711873 (Clockwise)
Preceding gene: 57650505
Following gene: 57650537
Centisome position: 60.89
GC content: 36.39
Gene sequence:
>1275_bases GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA ACTCGTGCAATAGAAGATGATGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC TACACAAAGCCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGACAAGGATGGTGACATG CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAC GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA
Upstream 100 bases:
>100_bases TAGTAGAAATTTTCATTGTATAACCTCACTTAATTCGAATATTGATATTCCCATTTTAGCATTTTTTGAGTTAAGATAGT ATAAGAAAGGTGTGACAAAT
Downstream 100 bases:
>100_bases AAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACT ATGCTTGCGAACTAGTCAGT
Product: recombination factor protein RarA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 424; Mature: 423
Protein sequence:
>424_residues MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL TRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY EPKTTSKSEQQLKEIYNNLLKQRP
Sequences:
>Translated_424_residues MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL TRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY EPKTTSKSEQQLKEIYNNLLKQRP >Mature_423_residues STEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDM QLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALT RAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDMH YDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQA VIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYE PKTTSKSEQQLKEIYNNLLKQRP
Specific function: Unknown
COG id: COG2256
COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AAA ATPase family [H]
Homologues:
Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=33.7868480725624, Blast_Score=245, Evalue=5e-65, Organism=Homo sapiens, GI18426904, Length=441, Percent_Identity=30.3854875283447, Blast_Score=201, Evalue=8e-52, Organism=Homo sapiens, GI4506491, Length=220, Percent_Identity=26.8181818181818, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI31881687, Length=220, Percent_Identity=26.8181818181818, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI6677723, Length=310, Percent_Identity=23.8709677419355, Blast_Score=69, Evalue=8e-12, Organism=Homo sapiens, GI194306571, Length=309, Percent_Identity=23.9482200647249, Blast_Score=67, Evalue=4e-11, Organism=Homo sapiens, GI194306567, Length=309, Percent_Identity=23.9482200647249, Blast_Score=67, Evalue=4e-11, Organism=Escherichia coli, GI1787119, Length=405, Percent_Identity=36.5432098765432, Blast_Score=267, Evalue=1e-72, Organism=Saccharomyces cerevisiae, GI6324111, Length=431, Percent_Identity=33.6426914153132, Blast_Score=235, Evalue=9e-63, Organism=Saccharomyces cerevisiae, GI6324039, Length=223, Percent_Identity=27.8026905829596, Blast_Score=74, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6322528, Length=294, Percent_Identity=22.7891156462585, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI19921076, Length=234, Percent_Identity=26.0683760683761, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR008824 - InterPro: IPR021886 [H]
Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]
EC number: NA
Molecular weight: Translated: 47251; Mature: 47120
Theoretical pI: Translated: 8.52; Mature: 8.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAI CCCCCHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHH SGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK CCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCC IVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDDENGLKTYQPKIDE EEEEECCCCCCCHHCCHHHHHHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH DAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM HHHHHHCCCCCCHHHHHHHHHHHHHEECCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCC HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTL HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHCCCCCCCCCHHHH AAIESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDG HHHHHHHHCCCCHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCC HYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSEQQLKEIYNNLL CCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHCCCEEECCCCCCHHHHHHHHHHHHHH KQRP HCCC >Mature Secondary Structure STEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAI CCCCHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHH SGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK CCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCC IVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDDENGLKTYQPKIDE EEEEECCCCCCCHHCCHHHHHHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH DAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM HHHHHHCCCCCCHHHHHHHHHHHHHEECCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCC HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTL HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHCCCCCCCCCHHHH AAIESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDG HHHHHHHHCCCCHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCC HYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSEQQLKEIYNNLL CCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHCCCEEECCCCCCHHHHHHHHHHHHHH KQRP HCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]