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The map label for this gene is fliR [H]

Identifier: 57238051

GI number: 57238051

Start: 1227099

End: 1227866

Strand: Reverse

Name: fliR [H]

Synonym: CJE1313

Alternate gene names: 57238051

Gene position: 1227866-1227099 (Counterclockwise)

Preceding gene: 57238052

Following gene: 57238050

Centisome position: 69.07

GC content: 27.73

Gene sequence:

>768_bases
ATGGAATTTGTTAATTATTTAGGCGATAAAAATGTTGTAACTTTTATGTTGCTTCTTGCTAGAATGAGTGGTCTTATAGT
TTTTTTTCCTTTTTTTTCACATAATTCTATTCCTATGGTAATAAAAAGTACTATAGTTTTATTTTTGACTATGTATTTAT
ATCCTTTGGCTAGATTAGAATCTTTGCATTTAGATAGTTTTTTTGTTTTACAGCTTATTAGTGAAGTGATTTTTGGAATG
ATAGCAGGATTAATGCTTCAAATTATTTTTGCTATTATTATGATGGCAGGTGAGCAGATTGCTTTTACTATGGGATTTAC
TATGGCAAGTATATTAGATCCAAGTTCTGGAACGAGTATGCCTATTACGGCACAAATTTTAAATTTACTTGCTTTGATGT
TTTTTCTTGCTTTTGATGGCCATCATTTAATGCTTTTGTTTTTAAGTCATTCTTTGGGTTATATTAGTTTAGGTGGATTT
TATCCGCATGAGAATTTAATGCATTATTTAAATATGGGTATGTTTAATATTTTCATCATAGGTTTTACTATGAGCTTTCC
TATACTTGGAATTTCACTTTTAGCCGATGTTATTTTTGGACTTTTGATGAAAACAATGCCACAATTTAATCTTTTAGTTA
TTGGCTATCCTATAAAGATAGCTCTAGGTTTTGTAGTTTTGATTGCTATTTTACTAGTTATGATGCAATATTTTAAAAAT
TTAATTTTAGAACTTTTTACTCATATGCAAACTCTTTTTTTCTCCTAA

Upstream 100 bases:

>100_bases
TTAATTTCTTATGTTAAAGAAAATGATGCGGCTTTATTTTTTGTAACTCACGATAGTAAGCTCGCAAGTTTTTGTGATAA
AATTTATACTATAAACGTCA

Downstream 100 bases:

>100_bases
GGAAAGGATAAATGAAATTATCGTAAAATAGCGATTATTTTTTAAGGATTAAAGTGATGAAAATTTTACTTTTAAATGAA
AACCCTGTAGTTTCAAGACT

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGM
IAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITAQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKN
LILELFTHMQTLFFS

Sequences:

>Translated_255_residues
MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGM
IAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITAQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKN
LILELFTHMQTLFFS
>Mature_255_residues
MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGM
IAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITAQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKN
LILELFTHMQTLFFS

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=230, Percent_Identity=29.1304347826087, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28844; Mature: 28844

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
9.0 %Met     (Translated Protein)
9.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
9.0 %Met     (Mature Protein)
9.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLARLE
CCHHHHHCCCHHHHHHHHHHHHCCCEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSM
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
PITAQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFII
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
GFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
LILELFTHMQTLFFS
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLARLE
CCHHHHHCCCHHHHHHHHHHHHCCCEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSM
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
PITAQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFII
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
GFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
LILELFTHMQTLFFS
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]