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The map label for this gene is ygaD [C]

Identifier: 57237947

GI number: 57237947

Start: 1125979

End: 1127067

Strand: Direct

Name: ygaD [C]

Synonym: CJE1205

Alternate gene names: 57237947

Gene position: 1125979-1127067 (Clockwise)

Preceding gene: 57237925

Following gene: 57237948

Centisome position: 63.33

GC content: 29.02

Gene sequence:

>1089_bases
ATGAAACATTTGCTTTATCTTATAGGAGATGAGCTTACTATAAACGAAAAATTCAAAAATTATATTTATAGAACTTATGA
AGAAAAATTTAAAGAAATCAACGAAATTCGCATACAAAATAAAACCGATAAAGATTTACCTTTTTTACTTGAAAATCTCT
TAAATCAGTATGATTTTATCACTTTATTTACAAGCTCTTTGCATTATGCGACTGTTGCTAAAATTTTAGCAACTTTAAAT
GATGATAATCTTATCTTAAAAGATGATACCTTGGTTCCAGATAAAGCAGAATTTAGTAAAAATAGCTTTGTGTGTAATTT
TTCAAATTCAAAAATTAATGTCGTTAAAATAAATCCAAGCGAAAAATTACCCAATCTTCTTGGACATATAAAATTAAATT
TTGCATATTTTTGCATTTTTGGCATGGATGATGAAAGCGCTATATTGCTACTGCAAACCCTAACAAAATCTTATGAGATA
AGTATAAAATCAACCAAGCTTTTAGATAATCTTGTGCTTATTAAGGCCACTTGCGCTAATTTTGGAAAACTTGATGGTTT
TTTAAATAGCGTAAAAAATCTTTTTGGACAAAAGGTATTTTTAGGTAAAGATCCCATACATTTTATAAGCTCTAAACTTT
TAGAAAAAAAATTAAAAATTTCTTTTGCTGAAAGTTGCACAGGTGGACTTTGTGCAAGTACCTTAACCAAAATTTCAGGT
GTAAGTGAAATTTTTGAAGGTTCTATTGTAAGTTATTCCAACCGCATCAAACACGAATGGCTTGGAATTAGCGAAAGCGT
CTTAGAAAATAATGGCGAATACAGTGAACGTTGTGTTTATTTTATGCTAAAAGGTATTTTTAAAACAGCTAATCCTGATT
TTGCCTTAGCTGTTAGCGGAGTAGTTGGCGAAAAAGATGAGGGAAAAATAAAATCAGGCACTATTTATATAGGTGCAATG
TTTAGAGATGGAACTTTTATCCAAGAAACGCTTTATTTAGATGGAGATCGTGAATTTATGCAAGAACAAGCTGTTTTGGC
AACTTTTTGCTTACTTTTAAAATTAAAACCTGAAATTTTTGAAATTTAA

Upstream 100 bases:

>100_bases
ATTTTTTCCACCTAATTTTTAATAATCTTAAATTCTACTCAAATTAGCTTTAATTTCTACTTTGTTTTTGGCTATAATTA
TAAGAAAAAAAGGAAAATTT

Downstream 100 bases:

>100_bases
GGGATTTAAAAATGAAAGAAATTAAGCTAAAAGAAGACTTGGAAAAAATTTATCCCTTGATAAAACAATTAAGAAATAAC
CTATCTTTGAAAGATTTTTT

Product: competence/damage-inducible domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDKDLPFLLENLLNQYDFITLFTSSLHYATVAKILATLN
DDNLILKDDTLVPDKAEFSKNSFVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
SIKSTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKLKISFAESCTGGLCASTLTKISG
VSEIFEGSIVSYSNRIKHEWLGISESVLENNGEYSERCVYFMLKGIFKTANPDFALAVSGVVGEKDEGKIKSGTIYIGAM
FRDGTFIQETLYLDGDREFMQEQAVLATFCLLLKLKPEIFEI

Sequences:

>Translated_362_residues
MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDKDLPFLLENLLNQYDFITLFTSSLHYATVAKILATLN
DDNLILKDDTLVPDKAEFSKNSFVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
SIKSTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKLKISFAESCTGGLCASTLTKISG
VSEIFEGSIVSYSNRIKHEWLGISESVLENNGEYSERCVYFMLKGIFKTANPDFALAVSGVVGEKDEGKIKSGTIYIGAM
FRDGTFIQETLYLDGDREFMQEQAVLATFCLLLKLKPEIFEI
>Mature_362_residues
MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDKDLPFLLENLLNQYDFITLFTSSLHYATVAKILATLN
DDNLILKDDTLVPDKAEFSKNSFVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
SIKSTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKLKISFAESCTGGLCASTLTKISG
VSEIFEGSIVSYSNRIKHEWLGISESVLENNGEYSERCVYFMLKGIFKTANPDFALAVSGVVGEKDEGKIKSGTIYIGAM
FRDGTFIQETLYLDGDREFMQEQAVLATFCLLLKLKPEIFEI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=137, Percent_Identity=33.5766423357664, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR020817
- InterPro:   IPR001453 [H]

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth [H]

EC number: NA

Molecular weight: Translated: 40989; Mature: 40989

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDKDLPFLLENLLNQYDFI
CCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHEE
TLFTSSLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNSFVCNFSNSKINVVKINPS
EHHHCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHCCCCCEEEEECCCEEEEEEECCH
EKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEISIKSTKLLDNLVLIKATCAN
HHHHHHHHHEEEEEEEEEEEECCCCCHHHHEEHHCCCEEEEEEHHHHHHHHHEEEEHHCC
FGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKLKISFAESCTGGLCASTLTKISG
CHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
VSEIFEGSIVSYSNRIKHEWLGISESVLENNGEYSERCVYFMLKGIFKTANPDFALAVSG
HHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
VVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLDGDREFMQEQAVLATFCLLLKLKPEIF
CCCCCCCCCEECCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHH
EI
CC
>Mature Secondary Structure
MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDKDLPFLLENLLNQYDFI
CCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHEE
TLFTSSLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNSFVCNFSNSKINVVKINPS
EHHHCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHCCCCCEEEEECCCEEEEEEECCH
EKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEISIKSTKLLDNLVLIKATCAN
HHHHHHHHHEEEEEEEEEEEECCCCCHHHHEEHHCCCEEEEEEHHHHHHHHHEEEEHHCC
FGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKLKISFAESCTGGLCASTLTKISG
CHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
VSEIFEGSIVSYSNRIKHEWLGISESVLENNGEYSERCVYFMLKGIFKTANPDFALAVSG
HHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
VVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLDGDREFMQEQAVLATFCLLLKLKPEIF
CCCCCCCCCEECCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHH
EI
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA