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The map label for this gene is 57237828

Identifier: 57237828

GI number: 57237828

Start: 1011072

End: 1011590

Strand: Reverse

Name: 57237828

Synonym: CJE1083

Alternate gene names: NA

Gene position: 1011590-1011072 (Counterclockwise)

Preceding gene: 57237830

Following gene: 57237827

Centisome position: 56.9

GC content: 26.4

Gene sequence:

>519_bases
TTGCTTACAATTTTTTTAATTTTTTTAAATATTTTATGTTATTTTTTGATTTCTTATGATTATTACAATATCCTTGGTTT
GAATATTTTATTTTTTAATGGAGCTTATTGGCAGCTTTTAAGTTCAATGTTTTTACATGGAAATTTAACTCATCTTATAT
TAAATATGATAGTTTTGTTTCAATTTGGGCGTATGTTAGAAACTTATTTGGGTGCTTTGTGTTTTATTTTTATTTATTTT
ATTGGCGGATTGTTGTGCTCACTTTTAAGTGTTTTTTATGTGTATTTTGATTTTAAATATTTTGGAGAAAATATAAATGT
CATAGGCGCTAGTGGTGCAATTTGTGTTTTAATGGGCTTTTATGCTGTTATTGATAAAAATAGCACAAAAGGACTTATAG
TGGCAATTTTACTTATGAGTTTTGTGCCATTGCTTATGGGGGTAAATGTTGCTTGGTATGGTCATATTTTCGGGTTTATG
TGTGGTTATATTTTAGCTAAAATAAAAGAGGTAAAATGA

Upstream 100 bases:

>100_bases
AATATTTTTCCTAAATTATTTTTTAGTAAAATTGTAAAGAATTTATGTGAATTTTATGTGAATTTTAAGACAATATTATA
AAAAATAAAGGTTTTATATT

Downstream 100 bases:

>100_bases
AAAAAATTTATATTATAAGACATGCAAAAGCAAGTAAGAGTGAAGACATCGATGATTTTGAAAGAAAACTTACTAAGAGT
GGAAAGGAAGATTTAAAAAA

Product: rhomboid family protein

Products: NA

Alternate protein names: Rhomboid-Like Protein; Serine Peptidase; Rhomboid; Peptidase E; Peptidase

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MLTIFLIFLNILCYFLISYDYYNILGLNILFFNGAYWQLLSSMFLHGNLTHLILNMIVLFQFGRMLETYLGALCFIFIYF
IGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVIDKNSTKGLIVAILLMSFVPLLMGVNVAWYGHIFGFM
CGYILAKIKEVK

Sequences:

>Translated_172_residues
MLTIFLIFLNILCYFLISYDYYNILGLNILFFNGAYWQLLSSMFLHGNLTHLILNMIVLFQFGRMLETYLGALCFIFIYF
IGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVIDKNSTKGLIVAILLMSFVPLLMGVNVAWYGHIFGFM
CGYILAKIKEVK
>Mature_172_residues
MLTIFLIFLNILCYFLISYDYYNILGLNILFFNGAYWQLLSSMFLHGNLTHLILNMIVLFQFGRMLETYLGALCFIFIYF
IGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVIDKNSTKGLIVAILLMSFVPLLMGVNVAWYGHIFGFM
CGYILAKIKEVK

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19655; Mature: 19655

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTIFLIFLNILCYFLISYDYYNILGLNILFFNGAYWQLLSSMFLHGNLTHLILNMIVLF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
QFGRMLETYLGALCFIFIYFIGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
YAVIDKNSTKGLIVAILLMSFVPLLMGVNVAWYGHIFGFMCGYILAKIKEVK
HHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLTIFLIFLNILCYFLISYDYYNILGLNILFFNGAYWQLLSSMFLHGNLTHLILNMIVLF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
QFGRMLETYLGALCFIFIYFIGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
YAVIDKNSTKGLIVAILLMSFVPLLMGVNVAWYGHIFGFMCGYILAKIKEVK
HHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA