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The map label for this gene is 57237739

Identifier: 57237739

GI number: 57237739

Start: 926030

End: 926590

Strand: Direct

Name: 57237739

Synonym: CJE0989

Alternate gene names: NA

Gene position: 926030-926590 (Clockwise)

Preceding gene: 57237738

Following gene: 57237743

Centisome position: 52.09

GC content: 25.67

Gene sequence:

>561_bases
ATGAAAAAAAATATTATTTTGTTTATAGTTATAGTTGCCATTATTTTAGGTGTAATATTTTTTATTAAAAATCATCAAAA
TTCTTATGATTTTATCTTAAAATCAGACTTAAAAGAGGAAACCACCCTAAAAGATTTTAAAGGAGATAAGCTTATTATCT
ATTTTGGATATACTTATTGCCCTGATGTTTGTCCGGCAACTCTTAGTTTAGTAGGCAAAGCCTTAAAGCAAATCAATAAT
CCTAAGGCTCACCTTCTTTTTATTTCTTTAGATCCAAATAGAGATAATAACTTAAGCAATACAAACGAATGGTTACGATA
CTTTTACCCAAAAGCAGATGCCTTAATTGCAAAAGATGAAAAAACTCTTCAAAAAATAACAAAACAATATAATGTTCAAT
ATCAAAAAATAGATCTAAATGATTCTTTTATGGGTTATTCTATAGCACATAGCAATATGCTTTATCTTATTGATGAAAAA
GGTCATTTTTATAAAGAAATTAGCGATTTAAATCCACAAGAAATTTTAAGAGAACTTAGAATTTTTCTAAATTCTCAATA
A

Upstream 100 bases:

>100_bases
TAGTTCTTGCTGCTTGCGTTTTAGATACTATGCGTTTCAGGGTAGAATTTATGGATAATAATAAACCCATAGGGTTTTAT
TTTGATTTTGAGCTAAAAAA

Downstream 100 bases:

>100_bases
TTATACTTAAGCAAAAAGATCAGTTGAGAGGTATCTTTCAGCCGTATCGTTTAGCATAGTTAAAATTCTTTTATCTGGAA
ATTTCTTTGCTAGCATACTT

Product: SCO1/SenC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLKDFKGDKLIIYFGYTYCPDVCPATLSLVGKALKQINN
PKAHLLFISLDPNRDNNLSNTNEWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEK
GHFYKEISDLNPQEILRELRIFLNSQ

Sequences:

>Translated_186_residues
MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLKDFKGDKLIIYFGYTYCPDVCPATLSLVGKALKQINN
PKAHLLFISLDPNRDNNLSNTNEWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEK
GHFYKEISDLNPQEILRELRIFLNSQ
>Mature_186_residues
MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLKDFKGDKLIIYFGYTYCPDVCPATLSLVGKALKQINN
PKAHLLFISLDPNRDNNLSNTNEWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEK
GHFYKEISDLNPQEILRELRIFLNSQ

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=137, Percent_Identity=34.3065693430657, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI281182727, Length=138, Percent_Identity=28.2608695652174, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI281182722, Length=138, Percent_Identity=28.2608695652174, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI281182716, Length=138, Percent_Identity=28.2608695652174, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI153791313, Length=138, Percent_Identity=28.2608695652174, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17531419, Length=138, Percent_Identity=29.7101449275362, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6319498, Length=126, Percent_Identity=31.7460317460317, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI19920710, Length=124, Percent_Identity=32.258064516129, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21738; Mature: 21738

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLKDFKGDKLIIYFGYTYC
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCCCEEEEEECCCCC
PDVCPATLSLVGKALKQINNPKAHLLFISLDPNRDNNLSNTNEWLRYFYPKADALIAKDE
CCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCH
KTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEKGHFYKEISDLNPQEILRELR
HHHHHHHHHHCCEEEEEECCCCCCCEEEECCCEEEEEECCCCHHHHHHCCCHHHHHHHHH
IFLNSQ
HHHCCC
>Mature Secondary Structure
MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLKDFKGDKLIIYFGYTYC
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCCCEEEEEECCCCC
PDVCPATLSLVGKALKQINNPKAHLLFISLDPNRDNNLSNTNEWLRYFYPKADALIAKDE
CCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCH
KTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEKGHFYKEISDLNPQEILRELR
HHHHHHHHHHCCEEEEEECCCCCCCEEEECCCEEEEEECCCCHHHHHHCCCHHHHHHHHH
IFLNSQ
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]