| Definition | Thermus thermophilus HB8 chromosome, complete genome. |
|---|---|
| Accession | NC_006461 |
| Length | 1,849,742 |
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The map label for this gene is polC [H]
Identifier: 55980782
GI number: 55980782
Start: 776074
End: 777948
Strand: Reverse
Name: polC [H]
Synonym: TTHA0813
Alternate gene names: 55980782
Gene position: 777948-776074 (Counterclockwise)
Preceding gene: 55980783
Following gene: 55980776
Centisome position: 42.06
GC content: 72.8
Gene sequence:
>1875_bases ATGAACGCCCTCCGCTTCCTCGGCGCCCTCCTCCTCGGCCTCCTCCTGGTGGCGGGAAGCCTCGCCCTCGGCCTCTTCCT CCTCCTGGAGGGCAACCCCGAGGCCCAGGCCGCCCTCTGGGAAGCGGTGCGGGCCCGGCCCATGGTGCCCCTCTTCACGG GCCTCCTCCTCCTGGGGGCGCTCTCCCTCCTCCTCTACCCGCCCTTCCTGGGCTACCTGGCCCTGACCCGGGCCTTGGGG CAGGAAAGCGAGGTGCTCCTCGCCCACCCCGGGCACCGCCTCACCCCCCGGGGGCCTTGGGAGCTGCGCCACCTGGCCCG GCTCATCAACCGGCTGGCGGAGGAAAAGGAGAGGCTGGAGCAAAGGCTTGAGGAGGAGGCGGCCCAGGCCAAGGACCTGG TGGAGGCGGAGCGGGAGCGCCTCGCCCGGGTCCTGGCCCAGCTCCCCCAGGGGGTGGTGCTCTCGGACGAGCGGGGGCTC GTCCTCCTCTACAACCCCAAGGCCCGGGCCCTTCTGGGGGAGGGGCTCGGGGTGGGGAAAAGCCTCTTCGGCCTCCTGGA CCGGTCCCTCCTCCTCCACGCCCAGTCCCTGCCCCAGGCCGCCTTCCTGGTCCAGGGCCCCAAGGGGCCTTTGCGCCTGA AGGCGCGGGCTTTGGAGGAGGGGTTTCTCCTTCTCCTGGAGGAGGCCCTCCCCGAGGGGCCGAGCCGGGAGCGGCTCCAC CGCCTCAAGGACAAGGCGGCGGGGGTCCGGGCCCTGGTGGAGGTGCTGGAAAGGGAGACCACCGGGGAGGCGAAGCGGCT TCTCCAGGTGGCCCGGGAGGCCCTGGACGAGATCCAAGGCCTCCTCCAGGACCTCGCCCCAAGCCCCCACGAGGAGGTGC TGGCCCAAGACCTCCTCCGCCTTTTGGCGGGCCGCCTGGAGGCGCGGCTCGCCCTCACCCCCGGGTGGGCCCTGGACCCG GAGGCGGAAGGGCTTCTCGTCCAGGCGGACACCTTCGCCCTGGCGGAGGGGCTCGCCAAGACCTTGGAGGGCACGGAGGA GGTCTTCCTCCGGGGAGAGGCCGAGGGGGAGGGGCTCTTCCGGCTCACCGTCCTCCTTCCCCGGGAAGCCCCCAGGCCCC ACCCCCTCCTCGCCGAGGCCGCCGAGGCCACGGGAAGCCTTTGGCGGGAGGGAAGCCGGCTCGTCCTTCTCCTCCCCGCC CGCAAAGCGCCCCCCGAGGCCTTAAAAGAAGCCCCCGCCCCCAGGGCCCTGGTCTACGACCTCACCCTCCTCCAGGTGCC GCCGGGCCTCGAGGACGTCCCCCTGGACCAGCTCCTCTACACCGCCTTTGACCTGGAAACCACGGGCCTGGACCCCGAGC AAGACGCCGTGGTGGCCCTCGCCGGGGTCCACGTCCTGGGCCGGAGGGTCCTGCGGCAGGAGGTGTTTGAGGCCCTGGTG AACCCGGGGCGCCCCATCTCCCCCGCGGCCACGGCGGTCCACGGCCTCACGGCGGAGATGCTCCGGGACAAGCCCCCCCT GGAGGCGGTCCTCCCCGCCTTCCGCGCCTTCGTCCAGGACACGGTGCTCGTGGCCCACAACGGGGCCTTTGACCTGGCCT TCCTGCGCCGGGCGGGCCTGGACCAGCCCCCCCTCCTGGACACCCTCCTCCTCGCCCAGCTCCTCTTCCCCGACCTCAAG GACTACCGCCTCGAGGCCCTGGCCCACCGCTTCGGCGTCCCCGCCACCGGGCGGCACACCGCCCTGGGCGACGCCCTGAT GACGGCGGAGGTCTTCGTGAGAATGCAGCCCCTCCTCTTTGAGCGGGGGCTTAAGCGGCTATGGGACGTGGTGGAAGCCT GCCGCCGCCTCCCCTTGGCCCGGCTCAGGTACTGA
Upstream 100 bases:
>100_bases ACCGGGCCAAGGCCCTGGCCTTGGGGGCGGACGCCTTCCTGGCCAAACCCTTCGGCGTCCAGGACCTCATGGCGGAGGCG CGCCGCCTCCTGGAGGAAGG
Downstream 100 bases:
>100_bases GCCGGGCGAGGGCCCTTCGGCCGATGTCCCTCCGGTACACCGCCCCGGGGAAGCCCACCTGGGGGATGTAGGCGTAGGCC CGCTCCAGGGCCTCCTTGAG
Product: DNA polymerase III subunit epsilon
Products: NA
Alternate protein names: PolIII [H]
Number of amino acids: Translated: 624; Mature: 624
Protein sequence:
>624_residues MNALRFLGALLLGLLLVAGSLALGLFLLLEGNPEAQAALWEAVRARPMVPLFTGLLLLGALSLLLYPPFLGYLALTRALG QESEVLLAHPGHRLTPRGPWELRHLARLINRLAEEKERLEQRLEEEAAQAKDLVEAERERLARVLAQLPQGVVLSDERGL VLLYNPKARALLGEGLGVGKSLFGLLDRSLLLHAQSLPQAAFLVQGPKGPLRLKARALEEGFLLLLEEALPEGPSRERLH RLKDKAAGVRALVEVLERETTGEAKRLLQVAREALDEIQGLLQDLAPSPHEEVLAQDLLRLLAGRLEARLALTPGWALDP EAEGLLVQADTFALAEGLAKTLEGTEEVFLRGEAEGEGLFRLTVLLPREAPRPHPLLAEAAEATGSLWREGSRLVLLLPA RKAPPEALKEAPAPRALVYDLTLLQVPPGLEDVPLDQLLYTAFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALV NPGRPISPAATAVHGLTAEMLRDKPPLEAVLPAFRAFVQDTVLVAHNGAFDLAFLRRAGLDQPPLLDTLLLAQLLFPDLK DYRLEALAHRFGVPATGRHTALGDALMTAEVFVRMQPLLFERGLKRLWDVVEACRRLPLARLRY
Sequences:
>Translated_624_residues MNALRFLGALLLGLLLVAGSLALGLFLLLEGNPEAQAALWEAVRARPMVPLFTGLLLLGALSLLLYPPFLGYLALTRALG QESEVLLAHPGHRLTPRGPWELRHLARLINRLAEEKERLEQRLEEEAAQAKDLVEAERERLARVLAQLPQGVVLSDERGL VLLYNPKARALLGEGLGVGKSLFGLLDRSLLLHAQSLPQAAFLVQGPKGPLRLKARALEEGFLLLLEEALPEGPSRERLH RLKDKAAGVRALVEVLERETTGEAKRLLQVAREALDEIQGLLQDLAPSPHEEVLAQDLLRLLAGRLEARLALTPGWALDP EAEGLLVQADTFALAEGLAKTLEGTEEVFLRGEAEGEGLFRLTVLLPREAPRPHPLLAEAAEATGSLWREGSRLVLLLPA RKAPPEALKEAPAPRALVYDLTLLQVPPGLEDVPLDQLLYTAFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALV NPGRPISPAATAVHGLTAEMLRDKPPLEAVLPAFRAFVQDTVLVAHNGAFDLAFLRRAGLDQPPLLDTLLLAQLLFPDLK DYRLEALAHRFGVPATGRHTALGDALMTAEVFVRMQPLLFERGLKRLWDVVEACRRLPLARLRY >Mature_624_residues MNALRFLGALLLGLLLVAGSLALGLFLLLEGNPEAQAALWEAVRARPMVPLFTGLLLLGALSLLLYPPFLGYLALTRALG QESEVLLAHPGHRLTPRGPWELRHLARLINRLAEEKERLEQRLEEEAAQAKDLVEAERERLARVLAQLPQGVVLSDERGL VLLYNPKARALLGEGLGVGKSLFGLLDRSLLLHAQSLPQAAFLVQGPKGPLRLKARALEEGFLLLLEEALPEGPSRERLH RLKDKAAGVRALVEVLERETTGEAKRLLQVAREALDEIQGLLQDLAPSPHEEVLAQDLLRLLAGRLEARLALTPGWALDP EAEGLLVQADTFALAEGLAKTLEGTEEVFLRGEAEGEGLFRLTVLLPREAPRPHPLLAEAAEATGSLWREGSRLVLLLPA RKAPPEALKEAPAPRALVYDLTLLQVPPGLEDVPLDQLLYTAFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALV NPGRPISPAATAVHGLTAEMLRDKPPLEAVLPAFRAFVQDTVLVAHNGAFDLAFLRRAGLDQPPLLDTLLLAQLLFPDLK DYRLEALAHRFGVPATGRHTALGDALMTAEVFVRMQPLLFERGLKRLWDVVEACRRLPLARLRY
Specific function: Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity [H]
COG id: COG2176
COG function: function code L; DNA polymerase III, alpha subunit (gram-positive type)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 exonuclease domain [H]
Homologues:
Organism=Escherichia coli, GI1786409, Length=172, Percent_Identity=33.1395348837209, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1788149, Length=157, Percent_Identity=35.031847133758, Blast_Score=69, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011708 - InterPro: IPR006054 - InterPro: IPR006055 - InterPro: IPR013520 - InterPro: IPR023223 - InterPro: IPR016027 - InterPro: IPR004013 - InterPro: IPR003141 - InterPro: IPR006308 - InterPro: IPR012337 [H]
Pfam domain/function: PF07733 DNA_pol3_alpha; PF00929 Exonuc_X-T; PF02811 PHP [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 68334; Mature: 68334
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: PS50112 PAS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNALRFLGALLLGLLLVAGSLALGLFLLLEGNPEAQAALWEAVRARPMVPLFTGLLLLGA CCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH LSLLLYPPFLGYLALTRALGQESEVLLAHPGHRLTPRGPWELRHLARLINRLAEEKERLE HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH QRLEEEAAQAKDLVEAERERLARVLAQLPQGVVLSDERGLVLLYNPKARALLGEGLGVGK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCHHHHHHCCCCCHH SLFGLLDRSLLLHAQSLPQAAFLVQGPKGPLRLKARALEEGFLLLLEEALPEGPSRERLH HHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH RLKDKAAGVRALVEVLERETTGEAKRLLQVAREALDEIQGLLQDLAPSPHEEVLAQDLLR HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LLAGRLEARLALTPGWALDPEAEGLLVQADTFALAEGLAKTLEGTEEVFLRGEAEGEGLF HHHHHHHHEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCHHHEEECCCCCCCEE RLTVLLPREAPRPHPLLAEAAEATGSLWREGSRLVLLLPARKAPPEALKEAPAPRALVYD EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCEEEEE LTLLQVPPGLEDVPLDQLLYTAFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALV EHHEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC NPGRPISPAATAVHGLTAEMLRDKPPLEAVLPAFRAFVQDTVLVAHNGAFDLAFLRRAGL CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHCCC DQPPLLDTLLLAQLLFPDLKDYRLEALAHRFGVPATGRHTALGDALMTAEVFVRMQPLLF CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH ERGLKRLWDVVEACRRLPLARLRY HHHHHHHHHHHHHHHHCCHHHCCC >Mature Secondary Structure MNALRFLGALLLGLLLVAGSLALGLFLLLEGNPEAQAALWEAVRARPMVPLFTGLLLLGA CCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH LSLLLYPPFLGYLALTRALGQESEVLLAHPGHRLTPRGPWELRHLARLINRLAEEKERLE HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH QRLEEEAAQAKDLVEAERERLARVLAQLPQGVVLSDERGLVLLYNPKARALLGEGLGVGK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCHHHHHHCCCCCHH SLFGLLDRSLLLHAQSLPQAAFLVQGPKGPLRLKARALEEGFLLLLEEALPEGPSRERLH HHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH RLKDKAAGVRALVEVLERETTGEAKRLLQVAREALDEIQGLLQDLAPSPHEEVLAQDLLR HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LLAGRLEARLALTPGWALDPEAEGLLVQADTFALAEGLAKTLEGTEEVFLRGEAEGEGLF HHHHHHHHEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCHHHEEECCCCCCCEE RLTVLLPREAPRPHPLLAEAAEATGSLWREGSRLVLLLPARKAPPEALKEAPAPRALVYD EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCEEEEE LTLLQVPPGLEDVPLDQLLYTAFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALV EHHEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC NPGRPISPAATAVHGLTAEMLRDKPPLEAVLPAFRAFVQDTVLVAHNGAFDLAFLRRAGL CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHCCC DQPPLLDTLLLAQLLFPDLKDYRLEALAHRFGVPATGRHTALGDALMTAEVFVRMQPLLF CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH ERGLKRLWDVVEACRRLPLARLRY HHHHHHHHHHHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11997336 [H]