Click here to switch to the map view.

The map label for this gene is opsX [H]

Identifier: 54295535

GI number: 54295535

Start: 2994062

End: 2995111

Strand: Reverse

Name: opsX [H]

Synonym: lpl2622

Alternate gene names: 54295535

Gene position: 2995111-2994062 (Counterclockwise)

Preceding gene: 54295536

Following gene: 54295534

Centisome position: 89.52

GC content: 40.86

Gene sequence:

>1050_bases
TTGTATTGCAGAATGATTAAATCGGTTTGTGTTATAAGGCTTTCAGCTTTAGGGGATGTTTTGATGTTGGTCCCACTGAT
AAGGACCTTGCAAAATAAATTGCCTAATGCTCAATTGACCTGGATTATTTCAAAACCTGCCTTTTATTTGGTGGAAGGAA
TGGAAGGCGTGGAGTTTATTGTTATTGATAAACCTAAAACGCTTGCTGACTATTGGCGGTTTAGGAAACAAATGTTGCCT
CGCCAGTTTGATGTGTTGTTAGCGCCTCAAGCCAGTTTTAGAACTAATTGGCTTATTCCATTTATTAAAGCTAAACGCAA
AGTTGGCTATGATTCTCACAGAGCGAATGATGGCCATCGTCTGTTTATAAAGGAAAGCATTACTCCTGGATTAGAGCATA
CACTTGAGGGCTTTTTAAAATTTGCTGAGCCTTTAGGTGTCACTGAAAAAATAATCCACTGGGATTTACCGATTACCAAG
GCAGATTATGAATGGGCTCAAAATCATTTGCCGGAACAAGAAAGGCCAATTTTAGTTGTTAATCCCGCAGCCAGCAAACC
TGAGCGCAGTTGGTTGGCGGAGCGATACATTGAGGTTCTGAAACAGGCGCAAGTTCAATGGGATGTCAAAGTTGTTTTAA
CTGGAGGGCCAGGTGATCATGATAAATCATTGGCAGAGGAAATAGCGAAAGAAATTCCAGTGGTTAATTTGGTTGGAAAG
ACAAAACCTAAGCAATTGTTGGCTGTGATCAGTAAAGCAAAAGCAGTCTTGTGCCCTGATACAGGACCTTCTCATATGGC
GGCAGCGGTAGGCACGCCTGTTGTGGCTTTGCATGCTGTTACCAATCCCTCTATTTCTGGCCCGTATACTTTTCAACATT
TGGTAGTTAACAGGTATTCGCAAGCTATCCAAACTGTATTAGGAGTGAGTCCAGAGAAGAGTGTTTGGGGTACGCAGGTC
CATGGATATGAAGCCATGAAATTAATTACCGTAGATGATGTAATGGAAAAATTAACTGAAATATTTTCAGAACTTATGAA
CAATACCTAA

Upstream 100 bases:

>100_bases
TGCCCAACAGATGAGATGGAGTTATGGAATGCTCATCCCAAGGTTTATTTGCCTATAGAGAAAACCGGGGTGGAGGTTTG
CCCTTATTGTGGCTCTCGTT

Downstream 100 bases:

>100_bases
TCTTTGTGTGGGAAAGGCTTTTAATGAGAGCATTTCGCTTCTGCTCATTAAAAGCTGTTTGCCCTTACCCTGGTGCTTTC
CCCAAGTACTGATTTTGATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MYCRMIKSVCVIRLSALGDVLMLVPLIRTLQNKLPNAQLTWIISKPAFYLVEGMEGVEFIVIDKPKTLADYWRFRKQMLP
RQFDVLLAPQASFRTNWLIPFIKAKRKVGYDSHRANDGHRLFIKESITPGLEHTLEGFLKFAEPLGVTEKIIHWDLPITK
ADYEWAQNHLPEQERPILVVNPAASKPERSWLAERYIEVLKQAQVQWDVKVVLTGGPGDHDKSLAEEIAKEIPVVNLVGK
TKPKQLLAVISKAKAVLCPDTGPSHMAAAVGTPVVALHAVTNPSISGPYTFQHLVVNRYSQAIQTVLGVSPEKSVWGTQV
HGYEAMKLITVDDVMEKLTEIFSELMNNT

Sequences:

>Translated_349_residues
MYCRMIKSVCVIRLSALGDVLMLVPLIRTLQNKLPNAQLTWIISKPAFYLVEGMEGVEFIVIDKPKTLADYWRFRKQMLP
RQFDVLLAPQASFRTNWLIPFIKAKRKVGYDSHRANDGHRLFIKESITPGLEHTLEGFLKFAEPLGVTEKIIHWDLPITK
ADYEWAQNHLPEQERPILVVNPAASKPERSWLAERYIEVLKQAQVQWDVKVVLTGGPGDHDKSLAEEIAKEIPVVNLVGK
TKPKQLLAVISKAKAVLCPDTGPSHMAAAVGTPVVALHAVTNPSISGPYTFQHLVVNRYSQAIQTVLGVSPEKSVWGTQV
HGYEAMKLITVDDVMEKLTEIFSELMNNT
>Mature_349_residues
MYCRMIKSVCVIRLSALGDVLMLVPLIRTLQNKLPNAQLTWIISKPAFYLVEGMEGVEFIVIDKPKTLADYWRFRKQMLP
RQFDVLLAPQASFRTNWLIPFIKAKRKVGYDSHRANDGHRLFIKESITPGLEHTLEGFLKFAEPLGVTEKIIHWDLPITK
ADYEWAQNHLPEQERPILVVNPAASKPERSWLAERYIEVLKQAQVQWDVKVVLTGGPGDHDKSLAEEIAKEIPVVNLVGK
TKPKQLLAVISKAKAVLCPDTGPSHMAAAVGTPVVALHAVTNPSISGPYTFQHLVVNRYSQAIQTVLGVSPEKSVWGTQV
HGYEAMKLITVDDVMEKLTEIFSELMNNT

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=291, Percent_Identity=25.085910652921, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1790051, Length=319, Percent_Identity=21.6300940438871, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790050, Length=357, Percent_Identity=23.5294117647059, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 39233; Mature: 39233

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS00063 ALDOKETO_REDUCTASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYCRMIKSVCVIRLSALGDVLMLVPLIRTLQNKLPNAQLTWIISKPAFYLVEGMEGVEFI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCEEE
VIDKPKTLADYWRFRKQMLPRQFDVLLAPQASFRTNWLIPFIKAKRKVGYDSHRANDGHR
EEECCHHHHHHHHHHHHHCCHHHCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCE
LFIKESITPGLEHTLEGFLKFAEPLGVTEKIIHWDLPITKADYEWAQNHLPEQERPILVV
EEEECCCCCCHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCHHHHHHCCCCCCCCEEEE
NPAASKPERSWLAERYIEVLKQAQVQWDVKVVLTGGPGDHDKSLAEEIAKEIPVVNLVGK
CCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHCCEEEECCC
TKPKQLLAVISKAKAVLCPDTGPSHMAAAVGTPVVALHAVTNPSISGPYTFQHLVVNRYS
CCHHHHHHHHHHCCEEECCCCCHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
QAIQTVLGVSPEKSVWGTQVHGYEAMKLITVDDVMEKLTEIFSELMNNT
HHHHHHHCCCCCCCCCCCEECCCHHEEEEEHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYCRMIKSVCVIRLSALGDVLMLVPLIRTLQNKLPNAQLTWIISKPAFYLVEGMEGVEFI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCEEE
VIDKPKTLADYWRFRKQMLPRQFDVLLAPQASFRTNWLIPFIKAKRKVGYDSHRANDGHR
EEECCHHHHHHHHHHHHHCCHHHCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCE
LFIKESITPGLEHTLEGFLKFAEPLGVTEKIIHWDLPITKADYEWAQNHLPEQERPILVV
EEEECCCCCCHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCHHHHHHCCCCCCCCEEEE
NPAASKPERSWLAERYIEVLKQAQVQWDVKVVLTGGPGDHDKSLAEEIAKEIPVVNLVGK
CCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHCCEEEECCC
TKPKQLLAVISKAKAVLCPDTGPSHMAAAVGTPVVALHAVTNPSISGPYTFQHLVVNRYS
CCHHHHHHHHHHCCEEECCCCCHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
QAIQTVLGVSPEKSVWGTQVHGYEAMKLITVDDVMEKLTEIFSELMNNT
HHHHHHHCCCCCCCCCCCEECCCHHEEEEEHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]