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The map label for this gene is lphB

Identifier: 54295530

GI number: 54295530

Start: 2986786

End: 2988429

Strand: Reverse

Name: lphB

Synonym: lpl2617

Alternate gene names: NA

Gene position: 2988429-2986786 (Counterclockwise)

Preceding gene: 54295533

Following gene: 54295527

Centisome position: 89.32

GC content: 36.62

Gene sequence:

>1644_bases
TTGAGTTCCCTGTTATCAAGAAGAAAAACCATTCTGGTGCTATTGATAGGCATTTATTGCGCTTACGATCTGATGGTCTC
GTTGTATACAGCTTGGAATTTCACAACAGATGATGCTTATATCAGCTGGTATTATGCACGACAGTTAGTGAGCGGCAAAG
GGCTGTTTTGGCATGTGACCCTGCCTCCCGTAGAGGGGTATTCCAATTTTTTATGGCTTATGATTGCTGCCTTGGTTATT
AAATTGCAATTACCTCTGGTGAGCAGTATGAAGGTCATTTCCTGTTGTAGCCTGGGATTGGCATTACTGTTTTTATATCG
ACTGGCAAGACTTTTTTGTAGCCCTCTACTATCCATATTACCTGTTTTTTTATTTAGCCATTATACAGGAGTGACTTGGT
GGGCGGTCAGTGGATTAGAAACCTTATTTTACTGCGCTCTGTCTTTGGCATTGATATGGCAGTGTACCTTGGCATTCGGT
TATCAAACTGTTGGTGACAGACCATGGCCCAATCGATTTTCTCTTTACTCAACCTCTCATTGGATAATAACCAATATGCT
CTTGTTATTATTGAGCTTAACACGATTTGAGGGAATCATTTGGATAATTCCTTTGGCTGTTTTTATAGGATGTCAATATT
TGAGGGCTCAAAGGGAGCTGGTTTTTAAAGATCATAAGAGATTGTGCTTATGGGTTTCAATTATTTTTATTTGCTTTGTA
TTGCCCTATCTTGCGTATTTTATTTGGCGATTAACTTATTTCGGCCATTGGATTCCTAATAGCTATCGTTGCAAAGCGTT
AGCTTATGGACAGTTTTTGGCAGTAGATTTTGATTATTTTCTTTTTATAACACCGTTGCTTGTATTATCGGTACCCTATT
TACTGTCTTCCAATAAAGATTGTCGCCATGTTTTACTATGGTTGCCTTCTGTTTTATATACTCTGTTGCTTTGGAAAGCA
AATCCTGTAGTAACATACGGTTTAAGATTGTTTTTAAGCCCATTTGCCCTTTTTTCCATATTACCTGTTTTAGGGCTTAA
TCAATTGATACAATATTTTAAATTTTTCAGATGGGATCCTGAATATCTGGCTGCTGTATTAATGTTGTTTATTACCTGGT
TTTTTGTGCCTGGTAATGATTTAAATCATTTATCCAAATCAGTTGCAGAATATAATGAACGCACTCAAAATAGAATGACT
ATTGCTGATTTGCTCAACCGAAAGGCAAAAAGAGGCGACAGCGTTCTGTTAGATGATTGTGGGATTATTCCTTTTTTTTC
TCGCGAAGACATTCGATTTATCGACGCGCAATGTTTGAACAATAGCGATTTAACCCAAAAACCATTTAAAAACGATTTAA
TTCTTTATGCCGATTATCTCAATTCTAAAGTGAAGCCTGATTGGGTGATCACCAATTACTACCCTATGGAAGCACGTGGT
GATTATTTAACAGATTTGCTATATGAAAAACATTTTTTTAAAAACTATCAATTAGTTAGCACATTAAATTCGGGGTTTTA
TTTAAACAAAAACCAACCGCAAGGGAAAAAAATGATTGATTTTGTGTACCAAATTTTTAAGCGTGTTAATAAAACTGGTT
ACAATGGCTCCCTGGAATTGGAATCCCAGGAGCCAAAGTGGTGA

Upstream 100 bases:

>100_bases
CATTATTTTTTTTGCATCATGATTTTGGAGCTTGTTGATACTTTGTGATATTGCTATTGTGGATTGTGTTATAGAAAAAT
TTTCTGGAGCAGAACACATT

Downstream 100 bases:

>100_bases
CTATTGTTGCTCAGAGGGAGAGCTTTGGTTTGAAAAATCTGCGGTCGGTTGGGCTGCTTTTAAGTTTTGCAATAGCATAA
TGCTGTTGGTTAACAATATC

Product: unknown, LphB

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 547; Mature: 546

Protein sequence:

>547_residues
MSSLLSRRKTILVLLIGIYCAYDLMVSLYTAWNFTTDDAYISWYYARQLVSGKGLFWHVTLPPVEGYSNFLWLMIAALVI
KLQLPLVSSMKVISCCSLGLALLFLYRLARLFCSPLLSILPVFLFSHYTGVTWWAVSGLETLFYCALSLALIWQCTLAFG
YQTVGDRPWPNRFSLYSTSHWIITNMLLLLLSLTRFEGIIWIIPLAVFIGCQYLRAQRELVFKDHKRLCLWVSIIFICFV
LPYLAYFIWRLTYFGHWIPNSYRCKALAYGQFLAVDFDYFLFITPLLVLSVPYLLSSNKDCRHVLLWLPSVLYTLLLWKA
NPVVTYGLRLFLSPFALFSILPVLGLNQLIQYFKFFRWDPEYLAAVLMLFITWFFVPGNDLNHLSKSVAEYNERTQNRMT
IADLLNRKAKRGDSVLLDDCGIIPFFSREDIRFIDAQCLNNSDLTQKPFKNDLILYADYLNSKVKPDWVITNYYPMEARG
DYLTDLLYEKHFFKNYQLVSTLNSGFYLNKNQPQGKKMIDFVYQIFKRVNKTGYNGSLELESQEPKW

Sequences:

>Translated_547_residues
MSSLLSRRKTILVLLIGIYCAYDLMVSLYTAWNFTTDDAYISWYYARQLVSGKGLFWHVTLPPVEGYSNFLWLMIAALVI
KLQLPLVSSMKVISCCSLGLALLFLYRLARLFCSPLLSILPVFLFSHYTGVTWWAVSGLETLFYCALSLALIWQCTLAFG
YQTVGDRPWPNRFSLYSTSHWIITNMLLLLLSLTRFEGIIWIIPLAVFIGCQYLRAQRELVFKDHKRLCLWVSIIFICFV
LPYLAYFIWRLTYFGHWIPNSYRCKALAYGQFLAVDFDYFLFITPLLVLSVPYLLSSNKDCRHVLLWLPSVLYTLLLWKA
NPVVTYGLRLFLSPFALFSILPVLGLNQLIQYFKFFRWDPEYLAAVLMLFITWFFVPGNDLNHLSKSVAEYNERTQNRMT
IADLLNRKAKRGDSVLLDDCGIIPFFSREDIRFIDAQCLNNSDLTQKPFKNDLILYADYLNSKVKPDWVITNYYPMEARG
DYLTDLLYEKHFFKNYQLVSTLNSGFYLNKNQPQGKKMIDFVYQIFKRVNKTGYNGSLELESQEPKW
>Mature_546_residues
SSLLSRRKTILVLLIGIYCAYDLMVSLYTAWNFTTDDAYISWYYARQLVSGKGLFWHVTLPPVEGYSNFLWLMIAALVIK
LQLPLVSSMKVISCCSLGLALLFLYRLARLFCSPLLSILPVFLFSHYTGVTWWAVSGLETLFYCALSLALIWQCTLAFGY
QTVGDRPWPNRFSLYSTSHWIITNMLLLLLSLTRFEGIIWIIPLAVFIGCQYLRAQRELVFKDHKRLCLWVSIIFICFVL
PYLAYFIWRLTYFGHWIPNSYRCKALAYGQFLAVDFDYFLFITPLLVLSVPYLLSSNKDCRHVLLWLPSVLYTLLLWKAN
PVVTYGLRLFLSPFALFSILPVLGLNQLIQYFKFFRWDPEYLAAVLMLFITWFFVPGNDLNHLSKSVAEYNERTQNRMTI
ADLLNRKAKRGDSVLLDDCGIIPFFSREDIRFIDAQCLNNSDLTQKPFKNDLILYADYLNSKVKPDWVITNYYPMEARGD
YLTDLLYEKHFFKNYQLVSTLNSGFYLNKNQPQGKKMIDFVYQIFKRVNKTGYNGSLELESQEPKW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63934; Mature: 63803

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLLSRRKTILVLLIGIYCAYDLMVSLYTAWNFTTDDAYISWYYARQLVSGKGLFWHVT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEE
LPPVEGYSNFLWLMIAALVIKLQLPLVSSMKVISCCSLGLALLFLYRLARLFCSPLLSIL
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVFLFSHYTGVTWWAVSGLETLFYCALSLALIWQCTLAFGYQTVGDRPWPNRFSLYSTSH
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCEEEECCCH
WIITNMLLLLLSLTRFEGIIWIIPLAVFIGCQYLRAQRELVFKDHKRLCLWVSIIFICFV
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPYLAYFIWRLTYFGHWIPNSYRCKALAYGQFLAVDFDYFLFITPLLVLSVPYLLSSNKD
HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCC
CRHVLLWLPSVLYTLLLWKANPVVTYGLRLFLSPFALFSILPVLGLNQLIQYFKFFRWDP
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
EYLAAVLMLFITWFFVPGNDLNHLSKSVAEYNERTQNRMTIADLLNRKAKRGDSVLLDDC
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECC
GIIPFFSREDIRFIDAQCLNNSDLTQKPFKNDLILYADYLNSKVKPDWVITNYYPMEARG
CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEHHHCCCCCCCEEEEEEECCCCCC
DYLTDLLYEKHFFKNYQLVSTLNSGFYLNKNQPQGKKMIDFVYQIFKRVNKTGYNGSLEL
HHHHHHHHHHHHHCCHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
ESQEPKW
CCCCCCC
>Mature Secondary Structure 
SSLLSRRKTILVLLIGIYCAYDLMVSLYTAWNFTTDDAYISWYYARQLVSGKGLFWHVT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEE
LPPVEGYSNFLWLMIAALVIKLQLPLVSSMKVISCCSLGLALLFLYRLARLFCSPLLSIL
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVFLFSHYTGVTWWAVSGLETLFYCALSLALIWQCTLAFGYQTVGDRPWPNRFSLYSTSH
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCEEEECCCH
WIITNMLLLLLSLTRFEGIIWIIPLAVFIGCQYLRAQRELVFKDHKRLCLWVSIIFICFV
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPYLAYFIWRLTYFGHWIPNSYRCKALAYGQFLAVDFDYFLFITPLLVLSVPYLLSSNKD
HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCC
CRHVLLWLPSVLYTLLLWKANPVVTYGLRLFLSPFALFSILPVLGLNQLIQYFKFFRWDP
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
EYLAAVLMLFITWFFVPGNDLNHLSKSVAEYNERTQNRMTIADLLNRKAKRGDSVLLDDC
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECC
GIIPFFSREDIRFIDAQCLNNSDLTQKPFKNDLILYADYLNSKVKPDWVITNYYPMEARG
CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEHHHCCCCCCCEEEEEEECCCCCC
DYLTDLLYEKHFFKNYQLVSTLNSGFYLNKNQPQGKKMIDFVYQIFKRVNKTGYNGSLEL
HHHHHHHHHHHHHCCHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
ESQEPKW
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA