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The map label for this gene is ycbC [H]

Identifier: 54295467

GI number: 54295467

Start: 2916347

End: 2917099

Strand: Reverse

Name: ycbC [H]

Synonym: lpl2553

Alternate gene names: 54295467

Gene position: 2917099-2916347 (Counterclockwise)

Preceding gene: 54295468

Following gene: 54295465

Centisome position: 87.19

GC content: 41.7

Gene sequence:

>753_bases
ATGGCATTCATTAGACATTTGCTTGAATACTTGCTGCATCCTTTCTTTTTATGTCTTTTGACATTAGGTATTTGCATTTT
TTTACTATATCGTCGGCTTGCTCCTACTTTCACTAAAGTTATGTTGTTTGTTGTATTGCTTGTCTTGCTTGCTATGAGTA
CGGGGTGGTTACCCAGTTATTTAACTTATCAATTAGAGTCTCGATACCCTATAGTGAAGCGGGTTAATCCGAATGTGAAA
TGGGTGGTCGTTCTCGGTGGAGGACAAAATATTGGGGAGGAAATGCCTGCAAATGATCTGTTGACCTCAGCGAGCATCAA
GCGATTGATTGAAGGCGTCCGATTATTCAGAACTTTGCCCGACGCAAAATTGCTTTTATCGGGGGGAGGATCTGCTGGTG
AGCAATCAGAGGCTTTATTATTGACAGAATTAGCCAAGTGGTTTGCAATCGATTCGGAAAAAGTTGTCGTTGAAACTGCT
TCTATTAATACAGCAGATCAGGCGCATGAATTAGCAGCCATAGTACATGATCAACCTTTTTATCTGGTTACCTCAGCGAT
TCACATGCCACGTTCCATGGCATTATGCCAGCAGCAAGGATTGCACCCCATAGCAGCCCCAACTGATTTTACCTTCTTTT
GGTCTACTGATACCTGGGTCAAAATGGTGATACCTAATTCTTATAACCTGGCCTATACTTCCATTGCTCTTCATGAAATC
CTGGGAAAAATATGGGCTTTGGGATTCAGATAA

Upstream 100 bases:

>100_bases
CAGTGAGCACAGTATTCCAATGGCCGCCTGAATTGGCTGCGTTTAGTCCTACTCTCATCTTTTCTTTAATTGGAATTTAT
TTAATGCGAAGAGTCAGATA

Downstream 100 bases:

>100_bases
GCTGATGCGCATTGAGACTTGGTTTTTAAATTCGCTACACTACTTGTCCGGCAGCCCAGCCGGAAGACCATGCCCACTGG
AAATTATACCCGCCTAACCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MAFIRHLLEYLLHPFFLCLLTLGICIFLLYRRLAPTFTKVMLFVVLLVLLAMSTGWLPSYLTYQLESRYPIVKRVNPNVK
WVVVLGGGQNIGEEMPANDLLTSASIKRLIEGVRLFRTLPDAKLLLSGGGSAGEQSEALLLTELAKWFAIDSEKVVVETA
SINTADQAHELAAIVHDQPFYLVTSAIHMPRSMALCQQQGLHPIAAPTDFTFFWSTDTWVKMVIPNSYNLAYTSIALHEI
LGKIWALGFR

Sequences:

>Translated_250_residues
MAFIRHLLEYLLHPFFLCLLTLGICIFLLYRRLAPTFTKVMLFVVLLVLLAMSTGWLPSYLTYQLESRYPIVKRVNPNVK
WVVVLGGGQNIGEEMPANDLLTSASIKRLIEGVRLFRTLPDAKLLLSGGGSAGEQSEALLLTELAKWFAIDSEKVVVETA
SINTADQAHELAAIVHDQPFYLVTSAIHMPRSMALCQQQGLHPIAAPTDFTFFWSTDTWVKMVIPNSYNLAYTSIALHEI
LGKIWALGFR
>Mature_249_residues
AFIRHLLEYLLHPFFLCLLTLGICIFLLYRRLAPTFTKVMLFVVLLVLLAMSTGWLPSYLTYQLESRYPIVKRVNPNVKW
VVVLGGGQNIGEEMPANDLLTSASIKRLIEGVRLFRTLPDAKLLLSGGGSAGEQSEALLLTELAKWFAIDSEKVVVETAS
INTADQAHELAAIVHDQPFYLVTSAIHMPRSMALCQQQGLHPIAAPTDFTFFWSTDTWVKMVIPNSYNLAYTSIALHEIL
GKIWALGFR

Specific function: Unknown

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787150, Length=182, Percent_Identity=32.4175824175824, Blast_Score=95, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003848
- InterPro:   IPR014729 [H]

Pfam domain/function: PF02698 DUF218 [H]

EC number: NA

Molecular weight: Translated: 28009; Mature: 27878

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFIRHLLEYLLHPFFLCLLTLGICIFLLYRRLAPTFTKVMLFVVLLVLLAMSTGWLPSY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
LTYQLESRYPIVKRVNPNVKWVVVLGGGQNIGEEMPANDLLTSASIKRLIEGVRLFRTLP
HHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
DAKLLLSGGGSAGEQSEALLLTELAKWFAIDSEKVVVETASINTADQAHELAAIVHDQPF
CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCH
YLVTSAIHMPRSMALCQQQGLHPIAAPTDFTFFWSTDTWVKMVIPNSYNLAYTSIALHEI
HHHHHHHHCHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHH
LGKIWALGFR
HHHHHHCCCC
>Mature Secondary Structure 
AFIRHLLEYLLHPFFLCLLTLGICIFLLYRRLAPTFTKVMLFVVLLVLLAMSTGWLPSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
LTYQLESRYPIVKRVNPNVKWVVVLGGGQNIGEEMPANDLLTSASIKRLIEGVRLFRTLP
HHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
DAKLLLSGGGSAGEQSEALLLTELAKWFAIDSEKVVVETASINTADQAHELAAIVHDQPF
CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCH
YLVTSAIHMPRSMALCQQQGLHPIAAPTDFTFFWSTDTWVKMVIPNSYNLAYTSIALHEI
HHHHHHHHCHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHH
LGKIWALGFR
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]