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The map label for this gene is yafM [C]

Identifier: 54295393

GI number: 54295393

Start: 2819044

End: 2819529

Strand: Reverse

Name: yafM [C]

Synonym: lpl2478

Alternate gene names: 54295393

Gene position: 2819529-2819044 (Counterclockwise)

Preceding gene: 54295394

Following gene: 54295392

Centisome position: 84.27

GC content: 36.42

Gene sequence:

>486_bases
ATGCAATATCGTAGAGCACTCTTGCCGGGGTCGACCTACTTTTTTACGGTTAATCTTGCTAATAGAACAAATGGAATTTT
AATCAAGGAAATCGATTTGTTGCTTTATGCTATACGAACAACCAAAGTCCAATATCCTTTTAAAATAATTGCCTATGTCA
TTTTGCCTGACCATTTGCATCTGATAATGATTTTGCCAGAACATGACAGTAACTACTCTTTGCGTTGGAGCATGATTAAG
TCTCTCTTTTCAAGGCAAATTCCTTGCCTGGAGTTAATTAGAACTGCAAGAAAAAGCAAACGAGAAAGAGGCATTTGGCA
GAGGCGCTTTTGGGAGCAACTGATAAGAGATGAATTGGATTTGGAGCATCATGTGAATTATATTCATTTTAACCCCGTGA
AACATGGCTATGTCCAAAAAGCATCTGATTGGAAATACTCCATTAATTCGGGTAATCAATTTAAATTGATATCAACAAAT
CCATAA

Upstream 100 bases:

>100_bases
TATAGCAAGCGTAGGTCGGGCCTTGGCCCGACAATTTCTTGAATTGAAGTAATAATTGATTTATAAACGTAGCCAATGGA
AATGAATCTGGTCCAAACTC

Downstream 100 bases:

>100_bases
TGTATAATGTTTTAACAATAGTGTCCTTTTAATTGGTAAGGTTATGGCTTTATTTGTTCTAGACTTTGATGAAACGATTA
CCTCTAAAAATACGCATAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MQYRRALLPGSTYFFTVNLANRTNGILIKEIDLLLYAIRTTKVQYPFKIIAYVILPDHLHLIMILPEHDSNYSLRWSMIK
SLFSRQIPCLELIRTARKSKRERGIWQRRFWEQLIRDELDLEHHVNYIHFNPVKHGYVQKASDWKYSINSGNQFKLISTN
P

Sequences:

>Translated_161_residues
MQYRRALLPGSTYFFTVNLANRTNGILIKEIDLLLYAIRTTKVQYPFKIIAYVILPDHLHLIMILPEHDSNYSLRWSMIK
SLFSRQIPCLELIRTARKSKRERGIWQRRFWEQLIRDELDLEHHVNYIHFNPVKHGYVQKASDWKYSINSGNQFKLISTN
P
>Mature_161_residues
MQYRRALLPGSTYFFTVNLANRTNGILIKEIDLLLYAIRTTKVQYPFKIIAYVILPDHLHLIMILPEHDSNYSLRWSMIK
SLFSRQIPCLELIRTARKSKRERGIWQRRFWEQLIRDELDLEHHVNYIHFNPVKHGYVQKASDWKYSINSGNQFKLISTN
P

Specific function: Unknown

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yafM [H]

Homologues:

Organism=Escherichia coli, GI1786422, Length=146, Percent_Identity=43.8356164383562, Blast_Score=130, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002686 [H]

Pfam domain/function: PF01797 Transposase_17 [H]

EC number: NA

Molecular weight: Translated: 19275; Mature: 19275

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYRRALLPGSTYFFTVNLANRTNGILIKEIDLLLYAIRTTKVQYPFKIIAYVILPDHLH
CCCCCCCCCCCEEEEEEEECCCCCCEEEEHHHHHHHHHHHCCCCCCHHHEEEEEECCCEE
LIMILPEHDSNYSLRWSMIKSLFSRQIPCLELIRTARKSKRERGIWQRRFWEQLIRDELD
EEEEEECCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
LEHHVNYIHFNPVKHGYVQKASDWKYSINSGNQFKLISTNP
HHHCCCEEEECCCCCCCEECCCCCEEEECCCCEEEEEECCC
>Mature Secondary Structure
MQYRRALLPGSTYFFTVNLANRTNGILIKEIDLLLYAIRTTKVQYPFKIIAYVILPDHLH
CCCCCCCCCCCEEEEEEEECCCCCCEEEEHHHHHHHHHHHCCCCCCHHHEEEEEECCCEE
LIMILPEHDSNYSLRWSMIKSLFSRQIPCLELIRTARKSKRERGIWQRRFWEQLIRDELD
EEEEEECCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
LEHHVNYIHFNPVKHGYVQKASDWKYSINSGNQFKLISTNP
HHHCCCEEEECCCCCCCEECCCCCEEEECCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]