Click here to switch to the map view.

The map label for this gene is vhuG [H]

Identifier: 54295303

GI number: 54295303

Start: 2718888

End: 2719673

Strand: Reverse

Name: vhuG [H]

Synonym: lpl2388

Alternate gene names: 54295303

Gene position: 2719673-2718888 (Counterclockwise)

Preceding gene: 54295304

Following gene: 54295302

Centisome position: 81.29

GC content: 41.6

Gene sequence:

>786_bases
ATGAAACCGCGTATCGCCGTACATAAATTTACTTCTTGTGATGGATGTCAATTGGCATTTTTAAATGCGGGTGAATCGTT
GTTGACTTTATCAGACTTGGTTGAAATCGTGCATTTTGCAGAGGCAGGTATGGTGAATTTGGATGTGAAAGTGGATATCG
CTTTTGTGGAAGGCAGCATTTCAACTCCTGATGAAGAGCATCGGATACATAAAATTCGTGAAAACAGTCAATACCTTATT
ACCATAGGTGCTTGTGCTACCGCCGGCGGTATACAAGCTTTGCGTAATTTTGCAGATTCCGGGGAATGGATGGCCAGCGT
TTATGCTTCACCGAATTATATTAAGACTTTAACGACCTCAACGGCTATTGCGCATCACGTTAAAGTGGATTGGGAGTTAT
GGGGATGTCCTGTAAATAGCGGGCAGATATTGGAGGCGATTCGTTTTTTATTATCTAACGCGACCCCCAAAATAAAAAGA
GATTCTGAATGCATGGAGTGCAAACGAAAAGGGAATGTGTGTGTGCTGGTGACCAAAAAACAACCTTGTATGGGGCCAGT
AACTCAAACAGGCTGTGGGTCGCTTTGCCCCACTTTAGGCAGAGCATGTTATGCTTGTTATGGGCCAAAAGAAAATGCTA
ATCCCAATTCTTTGGGAGAGTGGTTTTTATCTATCGGATTAACCAAAGAAGCGATTGCCAGGCAGTTTTTACATATTAAT
AATCAGGCATCTGCATTTAATCAAGCTGGAAATTACTTTAAGGGAATTAAAATCAGCAATGGGTAA

Upstream 100 bases:

>100_bases
ACGGTGGTTTATTCGTGTGTAAAGATGGTCCTGTATTTGCTTATTCTCAAATTAAAGAGTTATTCAAAGAATCTGGATTT
TAAAGTGCCTGAGGAACGCT

Downstream 100 bases:

>100_bases
AGACATTTCAATTAATGTTCCAATTTTGGCGCGGGTGGAAGGAGAGGGGGCTCTTGAACTTTGCATTCGGGATAGCAAAA
TTGATACATTAAAATTAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MKPRIAVHKFTSCDGCQLAFLNAGESLLTLSDLVEIVHFAEAGMVNLDVKVDIAFVEGSISTPDEEHRIHKIRENSQYLI
TIGACATAGGIQALRNFADSGEWMASVYASPNYIKTLTTSTAIAHHVKVDWELWGCPVNSGQILEAIRFLLSNATPKIKR
DSECMECKRKGNVCVLVTKKQPCMGPVTQTGCGSLCPTLGRACYACYGPKENANPNSLGEWFLSIGLTKEAIARQFLHIN
NQASAFNQAGNYFKGIKISNG

Sequences:

>Translated_261_residues
MKPRIAVHKFTSCDGCQLAFLNAGESLLTLSDLVEIVHFAEAGMVNLDVKVDIAFVEGSISTPDEEHRIHKIRENSQYLI
TIGACATAGGIQALRNFADSGEWMASVYASPNYIKTLTTSTAIAHHVKVDWELWGCPVNSGQILEAIRFLLSNATPKIKR
DSECMECKRKGNVCVLVTKKQPCMGPVTQTGCGSLCPTLGRACYACYGPKENANPNSLGEWFLSIGLTKEAIARQFLHIN
NQASAFNQAGNYFKGIKISNG
>Mature_261_residues
MKPRIAVHKFTSCDGCQLAFLNAGESLLTLSDLVEIVHFAEAGMVNLDVKVDIAFVEGSISTPDEEHRIHKIRENSQYLI
TIGACATAGGIQALRNFADSGEWMASVYASPNYIKTLTTSTAIAHHVKVDWELWGCPVNSGQILEAIRFLLSNATPKIKR
DSECMECKRKGNVCVLVTKKQPCMGPVTQTGCGSLCPTLGRACYACYGPKENANPNSLGEWFLSIGLTKEAIARQFLHIN
NQASAFNQAGNYFKGIKISNG

Specific function: Unknown

COG id: COG1941

COG function: function code C; Coenzyme F420-reducing hydrogenase, gamma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the [NiFe]/[NiFeSe] hydrogenase small subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: NA

Molecular weight: Translated: 28404; Mature: 28404

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
4.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPRIAVHKFTSCDGCQLAFLNAGESLLTLSDLVEIVHFAEAGMVNLDVKVDIAFVEGSI
CCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCC
STPDEEHRIHKIRENSQYLITIGACATAGGIQALRNFADSGEWMASVYASPNYIKTLTTS
CCCCHHHHHHHHHCCCCEEEEEECHHCHHHHHHHHHHHCCCCEEEEECCCCCEEEEHHHH
TAIAHHVKVDWELWGCPVNSGQILEAIRFLLSNATPKIKRDSECMECKRKGNVCVLVTKK
HHHEEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEEEECC
QPCMGPVTQTGCGSLCPTLGRACYACYGPKENANPNSLGEWFLSIGLTKEAIARQFLHIN
CCCCCCCCCCCCCHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCC
NQASAFNQAGNYFKGIKISNG
CHHHHHHHCCCEEECEEECCC
>Mature Secondary Structure
MKPRIAVHKFTSCDGCQLAFLNAGESLLTLSDLVEIVHFAEAGMVNLDVKVDIAFVEGSI
CCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCC
STPDEEHRIHKIRENSQYLITIGACATAGGIQALRNFADSGEWMASVYASPNYIKTLTTS
CCCCHHHHHHHHHCCCCEEEEEECHHCHHHHHHHHHHHCCCCEEEEECCCCCEEEEHHHH
TAIAHHVKVDWELWGCPVNSGQILEAIRFLLSNATPKIKRDSECMECKRKGNVCVLVTKK
HHHEEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEEEECC
QPCMGPVTQTGCGSLCPTLGRACYACYGPKENANPNSLGEWFLSIGLTKEAIARQFLHIN
CCCCCCCCCCCCCHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCC
NQASAFNQAGNYFKGIKISNG
CHHHHHHHCCCEEECEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1603063 [H]