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The map label for this gene is cph2 [H]

Identifier: 54295250

GI number: 54295250

Start: 2659272

End: 2660969

Strand: Reverse

Name: cph2 [H]

Synonym: lpl2333

Alternate gene names: 54295250

Gene position: 2660969-2659272 (Counterclockwise)

Preceding gene: 54295252

Following gene: 54295243

Centisome position: 79.53

GC content: 39.34

Gene sequence:

>1698_bases
ATGATAGCAAAGAGTAAAACGGACATGAATAGAATACAGATGGGAACAAATAAAGAGTTCCCAGGCAAATCACACCTCAA
ACCGTCAAAATCTTGTGGAACTGATGACTCCAATTTTCAGGTTGAGTTTTTATTGGATGTCATACAAAAACTTTCTCTTG
CAAAAGATCTGGAAACAATCATGTTCATTGTACGTAAGGCCGCTCGTACATTGACTGGAGCTGACGGTTCGACCTTTGTA
TTGCGTGATGGCAACCAATGCTATTACGCGGAGGAAGATGCAATTGCCCCTCTTTGGAAAGGCAAACGATTCCCTATGAG
TGCTTGTATCAGCGGTTGGGTTATGGAACATAGACAGTCGGTCATTATTGAAGATATTTATTCTGATCCAAGAATTCCCT
TTGATGCTTATCGGCCGACTTTTGTGAAGAGCTTGGCGATGGTTCCTATCAGAACAGCAGCCCCTTTGGGTGCCATTGGA
ATTTATTGGGCAGAATATTACTTTCCTACAGAGGAACAATTAAATTGGTTGCAGGTACTGGCTGATAGCACATCTGTTGC
AATGGAAAATGTGATGCTGCAATCAGAATTGGAGAAAGGCCAGAAAGAAACAACTGCTCAAATAGAAATGACTAGAAAAT
TAATGGAGGTCAATAAAAATCTTGAATGTGCCTTATATGAATTAAACCACCGCAATAAAGAAATGCAATGGTTGAAGGAG
TTAAGTTCAACATTGCAAACCTGTTTATATATCAAGGAAGCCTATCATTTAATTGCTCTGTATGCGGCTAAATTATTACC
TGGGTCATCAGGAATTTTCTATGTTATGCATCCCTCACGTAATTATCTTGAGGCTATGAGCTCATGGGGAGACTCTTTGA
TAGAAGAAAGGATCATTAAGCCAGATGATTGTCTGGGTTTGCGTCGTGGTTCGATTTATACAGTAGAAGAGCCTCAAAAG
GACTTAATATGCCCCCATCATACAATCAACAGTAATTTAAAACCTTATACCTGTATTCCTTTATTTGCTCAGAGCGATAT
TCTCGGTTTGGTTTGTATGGAATGGAAATCTTGTAAAAAGGAAGCAGAGGAAGAAATCAATAAAGAAAATAATCAGGAAA
TTCTCGCAAGTATGATGGCAGAGCAAATAGCGCTTGGTATTTCCAATATTATGCTGCGTGAAACTTTGCGTAACCAATCT
TTACGAGATGTTCTCACAGGGCTTTATAATCGACGTTATTTGAATGAAGCGCTGGATCGAGAATTAAACCGCTGTGCAAG
AAAATCATTATCACTTGCTGTGTTAATGTTGGATATTGATCATTTTAAACAGTTTAATGATAAATTCGGACATGAAGCGG
GTGATATGGTGATACAGGCTTTTGCTAATGTTTTGCGTCAGGTTACCCGAAAGGAGGATATAGCCTGCCGCTATGGAGGG
GAAGAGTTTATCCTGATTATACCAGAGATTGATCTGGAAGCAGCCTTACAAAGGGCTCAATCTATTCATGATGCAGTCAG
TCGTATTCATTTGCGTTATGGAGGTAATGCTTTAACTCAAATCACAATTTCCATAGGATTAACTATGTACCCAGCGCACG
GTAACGATATGCAAGACCTTATTACCGCCGCCGATAATGCGCTTTATGAAGCCAAAAACTCAGGACGAAATAAAACGGTA
TTGTATCATAAAAATTAG

Upstream 100 bases:

>100_bases
TGAAAATTTAAGTTACTAGACAACTTATAGAGAGGAGTGTTCCGAAGGATATTTTGTTTAAAAAACACCCATTTAGTATT
ATAATTACAATGAGACAAGG

Downstream 100 bases:

>100_bases
GGTACTTTGTTGCAATCAAAACATATTAGCTTCCGACCTTATTCAATCTATTAAGGCTATGTTTGGCTGTTACTGTAATG
AATTTGCGATAGAGCAACCC

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 565; Mature: 565

Protein sequence:

>565_residues
MIAKSKTDMNRIQMGTNKEFPGKSHLKPSKSCGTDDSNFQVEFLLDVIQKLSLAKDLETIMFIVRKAARTLTGADGSTFV
LRDGNQCYYAEEDAIAPLWKGKRFPMSACISGWVMEHRQSVIIEDIYSDPRIPFDAYRPTFVKSLAMVPIRTAAPLGAIG
IYWAEYYFPTEEQLNWLQVLADSTSVAMENVMLQSELEKGQKETTAQIEMTRKLMEVNKNLECALYELNHRNKEMQWLKE
LSSTLQTCLYIKEAYHLIALYAAKLLPGSSGIFYVMHPSRNYLEAMSSWGDSLIEERIIKPDDCLGLRRGSIYTVEEPQK
DLICPHHTINSNLKPYTCIPLFAQSDILGLVCMEWKSCKKEAEEEINKENNQEILASMMAEQIALGISNIMLRETLRNQS
LRDVLTGLYNRRYLNEALDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACRYGG
EEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDMQDLITAADNALYEAKNSGRNKTV
LYHKN

Sequences:

>Translated_565_residues
MIAKSKTDMNRIQMGTNKEFPGKSHLKPSKSCGTDDSNFQVEFLLDVIQKLSLAKDLETIMFIVRKAARTLTGADGSTFV
LRDGNQCYYAEEDAIAPLWKGKRFPMSACISGWVMEHRQSVIIEDIYSDPRIPFDAYRPTFVKSLAMVPIRTAAPLGAIG
IYWAEYYFPTEEQLNWLQVLADSTSVAMENVMLQSELEKGQKETTAQIEMTRKLMEVNKNLECALYELNHRNKEMQWLKE
LSSTLQTCLYIKEAYHLIALYAAKLLPGSSGIFYVMHPSRNYLEAMSSWGDSLIEERIIKPDDCLGLRRGSIYTVEEPQK
DLICPHHTINSNLKPYTCIPLFAQSDILGLVCMEWKSCKKEAEEEINKENNQEILASMMAEQIALGISNIMLRETLRNQS
LRDVLTGLYNRRYLNEALDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACRYGG
EEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDMQDLITAADNALYEAKNSGRNKTV
LYHKN
>Mature_565_residues
MIAKSKTDMNRIQMGTNKEFPGKSHLKPSKSCGTDDSNFQVEFLLDVIQKLSLAKDLETIMFIVRKAARTLTGADGSTFV
LRDGNQCYYAEEDAIAPLWKGKRFPMSACISGWVMEHRQSVIIEDIYSDPRIPFDAYRPTFVKSLAMVPIRTAAPLGAIG
IYWAEYYFPTEEQLNWLQVLADSTSVAMENVMLQSELEKGQKETTAQIEMTRKLMEVNKNLECALYELNHRNKEMQWLKE
LSSTLQTCLYIKEAYHLIALYAAKLLPGSSGIFYVMHPSRNYLEAMSSWGDSLIEERIIKPDDCLGLRRGSIYTVEEPQK
DLICPHHTINSNLKPYTCIPLFAQSDILGLVCMEWKSCKKEAEEEINKENNQEILASMMAEQIALGISNIMLRETLRNQS
LRDVLTGLYNRRYLNEALDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACRYGG
EEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDMQDLITAADNALYEAKNSGRNKTV
LYHKN

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=172, Percent_Identity=35.4651162790698, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=34.1317365269461, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=39.1812865497076, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=35.2941176470588, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=34.8571428571429, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1787802, Length=192, Percent_Identity=31.7708333333333, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1787816, Length=191, Percent_Identity=35.0785340314136, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=32.9341317365269, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1788381, Length=175, Percent_Identity=31.4285714285714, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081974, Length=217, Percent_Identity=27.1889400921659, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=28.6549707602339, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1788956, Length=189, Percent_Identity=30.6878306878307, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87081977, Length=216, Percent_Identity=26.8518518518519, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 64260; Mature: 64260

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAKSKTDMNRIQMGTNKEFPGKSHLKPSKSCGTDDSNFQVEFLLDVIQKLSLAKDLETI
CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MFIVRKAARTLTGADGSTFVLRDGNQCYYAEEDAIAPLWKGKRFPMSACISGWVMEHRQS
HHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHHHH
VIIEDIYSDPRIPFDAYRPTFVKSLAMVPIRTAAPLGAIGIYWAEYYFPTEEQLNWLQVL
HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
ADSTSVAMENVMLQSELEKGQKETTAQIEMTRKLMEVNKNLECALYELNHRNKEMQWLKE
HCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
LSSTLQTCLYIKEAYHLIALYAAKLLPGSSGIFYVMHPSRNYLEAMSSWGDSLIEERIIK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
PDDCLGLRRGSIYTVEEPQKDLICPHHTINSNLKPYTCIPLFAQSDILGLVCMEWKSCKK
CCHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
EAEEEINKENNQEILASMMAEQIALGISNIMLRETLRNQSLRDVLTGLYNRRYLNEALDR
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACRYGG
HHHHHHHHHHHHEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEECC
EEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDMQDL
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECEEEECCCCCCHHHH
ITAADNALYEAKNSGRNKTVLYHKN
HHHHHHHHHHHHCCCCCCEEEEECC
>Mature Secondary Structure
MIAKSKTDMNRIQMGTNKEFPGKSHLKPSKSCGTDDSNFQVEFLLDVIQKLSLAKDLETI
CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MFIVRKAARTLTGADGSTFVLRDGNQCYYAEEDAIAPLWKGKRFPMSACISGWVMEHRQS
HHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHHHH
VIIEDIYSDPRIPFDAYRPTFVKSLAMVPIRTAAPLGAIGIYWAEYYFPTEEQLNWLQVL
HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
ADSTSVAMENVMLQSELEKGQKETTAQIEMTRKLMEVNKNLECALYELNHRNKEMQWLKE
HCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
LSSTLQTCLYIKEAYHLIALYAAKLLPGSSGIFYVMHPSRNYLEAMSSWGDSLIEERIIK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
PDDCLGLRRGSIYTVEEPQKDLICPHHTINSNLKPYTCIPLFAQSDILGLVCMEWKSCKK
CCHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
EAEEEINKENNQEILASMMAEQIALGISNIMLRETLRNQSLRDVLTGLYNRRYLNEALDR
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACRYGG
HHHHHHHHHHHHEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEECC
EEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDMQDL
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECEEEECCCCCCHHHH
ITAADNALYEAKNSGRNKTVLYHKN
HHHHHHHHHHHHCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]