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The map label for this gene is nahR [H]

Identifier: 54295242

GI number: 54295242

Start: 2650375

End: 2651313

Strand: Reverse

Name: nahR [H]

Synonym: lpl2325

Alternate gene names: 54295242

Gene position: 2651313-2650375 (Counterclockwise)

Preceding gene: 54295243

Following gene: 54295239

Centisome position: 79.25

GC content: 39.19

Gene sequence:

>939_bases
ATGGCGATTCCCTTTAAACGTATTAATTTAAATCTCATACTACATCTGGATGCTTTACTAAGCGAGAGAAGCGTCAGTGC
TGCTGCAGAGAAAGTGTTTGTCAGCCAACCGGCAATGAGTTCTTCTTTAAAACAACTGAGAGAGCTATTTAAAGACCCGC
TATTAATTCCTGGTAAAGGGGAATATTATCTCTCTCCAAAAGCCAAAGAGTTACAGCCACAATTAGAACAAGTGATGTTT
TTCATAAGAAATATTCTGCAACCGAATGAGCGATTTGATCCCTTTCAGACCAAAAGAGCATTTAAAATCGCTTTACCTGA
TTACGTTGAATTAATTTTGTTGCCATCCCTGATGGCGGCGCTTGAAAAACTGCCTCATATTGTTATTGAGACAACGATTC
AGTCAATGGCTGATGATCCACTTCTGTTTATCGATGAGGATGTCGACCTGGCCATAGGAGCTATTAATGAAAATTCTCTA
TCCGCGCAACTCAAAGTTGAAAAACTGTATGAGGAGGAAATTATTTGTTTTGCAAGCAAAAACAATCCACTCATAAACAG
GTCATTATCTTTGGAAGATTACATAAGCAATAAACATATCGCATTTAGTTTTAATCAGGAGCGTTATAGCCACTCCGCTG
AATATTTATATAAAAGAAAGCTGGTACGTAATGACATGCTTTTTGTAAAAAATATCTTGCCCGTAATTTTTGCAGTGGCC
AATTCTGATGCGGTGATTTCCACAGCTCCAAGTTTTTTGATAAATATGTTTGCCAGACAGTTTAATCTGGGAATGCAACC
CTTACCCTTCGATCTGGAGCCAACACCCATTTACCTTGTGACCCATAGTAAGAGCCAGTATGATGAGGGCGTCGCCTGGT
TAGCCAAACTGGTCAGTTCAAGTATTAAAAGTCCTTCCTGCAGTATAGGTCTCGATTGA

Upstream 100 bases:

>100_bases
CTCTCAAAATACACCCTGTCTTGACAATGAATTATCCATATTGGATATTTTTAAATTTCTTATACTAATATAAGAAGAGA
ACAATTGCCGAGAGGATCGA

Downstream 100 bases:

>100_bases
TGAGATATCTGATTTTTCTGTCTCCTTCTTTATCTCAACAGGTTCATCCTGAATGGAAGTATCAGGAGAGCTATCAGAGC
TATCTGAGGATGATTTAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MAIPFKRINLNLILHLDALLSERSVSAAAEKVFVSQPAMSSSLKQLRELFKDPLLIPGKGEYYLSPKAKELQPQLEQVMF
FIRNILQPNERFDPFQTKRAFKIALPDYVELILLPSLMAALEKLPHIVIETTIQSMADDPLLFIDEDVDLAIGAINENSL
SAQLKVEKLYEEEIICFASKNNPLINRSLSLEDYISNKHIAFSFNQERYSHSAEYLYKRKLVRNDMLFVKNILPVIFAVA
NSDAVISTAPSFLINMFARQFNLGMQPLPFDLEPTPIYLVTHSKSQYDEGVAWLAKLVSSSIKSPSCSIGLD

Sequences:

>Translated_312_residues
MAIPFKRINLNLILHLDALLSERSVSAAAEKVFVSQPAMSSSLKQLRELFKDPLLIPGKGEYYLSPKAKELQPQLEQVMF
FIRNILQPNERFDPFQTKRAFKIALPDYVELILLPSLMAALEKLPHIVIETTIQSMADDPLLFIDEDVDLAIGAINENSL
SAQLKVEKLYEEEIICFASKNNPLINRSLSLEDYISNKHIAFSFNQERYSHSAEYLYKRKLVRNDMLFVKNILPVIFAVA
NSDAVISTAPSFLINMFARQFNLGMQPLPFDLEPTPIYLVTHSKSQYDEGVAWLAKLVSSSIKSPSCSIGLD
>Mature_311_residues
AIPFKRINLNLILHLDALLSERSVSAAAEKVFVSQPAMSSSLKQLRELFKDPLLIPGKGEYYLSPKAKELQPQLEQVMFF
IRNILQPNERFDPFQTKRAFKIALPDYVELILLPSLMAALEKLPHIVIETTIQSMADDPLLFIDEDVDLAIGAINENSLS
AQLKVEKLYEEEIICFASKNNPLINRSLSLEDYISNKHIAFSFNQERYSHSAEYLYKRKLVRNDMLFVKNILPVIFAVAN
SDAVISTAPSFLINMFARQFNLGMQPLPFDLEPTPIYLVTHSKSQYDEGVAWLAKLVSSSIKSPSCSIGLD

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=305, Percent_Identity=22.9508196721311, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35312; Mature: 35181

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIPFKRINLNLILHLDALLSERSVSAAAEKVFVSQPAMSSSLKQLRELFKDPLLIPGKG
CCCCCEEECEEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEECCCC
EYYLSPKAKELQPQLEQVMFFIRNILQPNERFDPFQTKRAFKIALPDYVELILLPSLMAA
CEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCEEEEECHHHHHHHHHHHHHHH
LEKLPHIVIETTIQSMADDPLLFIDEDVDLAIGAINENSLSAQLKVEKLYEEEIICFASK
HHHCCHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEECC
NNPLINRSLSLEDYISNKHIAFSFNQERYSHSAEYLYKRKLVRNDMLFVKNILPVIFAVA
CCCCEECCCCHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NSDAVISTAPSFLINMFARQFNLGMQPLPFDLEPTPIYLVTHSKSQYDEGVAWLAKLVSS
CCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
SIKSPSCSIGLD
HCCCCCCCCCCC
>Mature Secondary Structure 
AIPFKRINLNLILHLDALLSERSVSAAAEKVFVSQPAMSSSLKQLRELFKDPLLIPGKG
CCCCEEECEEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEECCCC
EYYLSPKAKELQPQLEQVMFFIRNILQPNERFDPFQTKRAFKIALPDYVELILLPSLMAA
CEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCEEEEECHHHHHHHHHHHHHHH
LEKLPHIVIETTIQSMADDPLLFIDEDVDLAIGAINENSLSAQLKVEKLYEEEIICFASK
HHHCCHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEECC
NNPLINRSLSLEDYISNKHIAFSFNQERYSHSAEYLYKRKLVRNDMLFVKNILPVIFAVA
CCCCEECCCCHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NSDAVISTAPSFLINMFARQFNLGMQPLPFDLEPTPIYLVTHSKSQYDEGVAWLAKLVSS
CCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
SIKSPSCSIGLD
HCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]