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The map label for this gene is pal

Identifier: 54294942

GI number: 54294942

Start: 2265522

End: 2266052

Strand: Reverse

Name: pal

Synonym: lpl2021

Alternate gene names: 54294942

Gene position: 2266052-2265522 (Counterclockwise)

Preceding gene: 54294943

Following gene: 54294941

Centisome position: 67.73

GC content: 47.83

Gene sequence:

>531_bases
ATGAAAGCCGGATCGTTTTATAAACTGGGACTGCTTGTAGCAAGCGCTGTATTGGTTGCAGCCTGTTCTAAAACCCCAGG
CAGTGCCGATGGTGGGGCTGCGGTAGGTGATGGTGATGCTACTGCCCAAGGTTTGGGGCAAATGACTCACTTTGCTGGAC
AAGAGCCTGGTGAGTCCTATACAACGCAGGCACCGCATAATCAATTGTATTTGTTTGCGTATGATGACAGCACTTTGGCA
TCAAAATATTTACCTTCTGTTAACGCGCAGGCAGAATATTTAAAGACTCACCCAGGTGCTCGAGTGATGATAGCTGGACA
TACTGATGAGCGTGGTAGCCGTGAATATAACGTTGCTCTTGGTGAACGCCGTGCTGATACTGTAGCTGAAATTCTGCGTA
TGGCAGGTGTTAGCAGACAACAAATTCGAGTAGTTAGCTACGGCAAAGAGCGCCCGGCTAATTATGGTCATGATGAAGCG
TCGCATGCGCAGAATCGACGCGTAGAGTTTATTTATGAGGCAACAAGATGA

Upstream 100 bases:

>100_bases
TAGGAATAGCCAAAAAATAAAAAGAATTGTACAATGGCTCTCCATGATTATCATGTGTAGTTTCTAAAAAATAATAAGAA
GAGTTTAAGGAGATTGTGGA

Downstream 100 bases:

>100_bases
TTAATTGCAAAAAATCCATTATCACCCTATGTTTTGTACTGATGCTTCCTTTCGCCTCATGGGCAGAAGCGCCAGTAATA
GATGATAGTGAAAATTTTGC

Product: peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL)

Products: NA

Alternate protein names: 19 kDa surface antigen; PPL

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MKAGSFYKLGLLVASAVLVAACSKTPGSADGGAAVGDGDATAQGLGQMTHFAGQEPGESYTTQAPHNQLYLFAYDDSTLA
SKYLPSVNAQAEYLKTHPGARVMIAGHTDERGSREYNVALGERRADTVAEILRMAGVSRQQIRVVSYGKERPANYGHDEA
SHAQNRRVEFIYEATR

Sequences:

>Translated_176_residues
MKAGSFYKLGLLVASAVLVAACSKTPGSADGGAAVGDGDATAQGLGQMTHFAGQEPGESYTTQAPHNQLYLFAYDDSTLA
SKYLPSVNAQAEYLKTHPGARVMIAGHTDERGSREYNVALGERRADTVAEILRMAGVSRQQIRVVSYGKERPANYGHDEA
SHAQNRRVEFIYEATR
>Mature_176_residues
MKAGSFYKLGLLVASAVLVAACSKTPGSADGGAAVGDGDATAQGLGQMTHFAGQEPGESYTTQAPHNQLYLFAYDDSTLA
SKYLPSVNAQAEYLKTHPGARVMIAGHTDERGSREYNVALGERRADTVAEILRMAGVSRQQIRVVSYGKERPANYGHDEA
SHAQNRRVEFIYEATR

Specific function: Very strongly associated with the peptidoglycan

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain

Homologues:

Organism=Escherichia coli, GI1786962, Length=168, Percent_Identity=38.0952380952381, Blast_Score=115, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PAL_LEGPN (P26493)

Other databases:

- EMBL:   X60543
- PIR:   A60337
- ProteinModelPortal:   P26493
- SMR:   P26493
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169
- Gene3D:   G3DSA:3.30.1330.60
- PRINTS:   PR01021
- TIGRFAMs:   TIGR02802

Pfam domain/function: PF00691 OmpA; SSF103088 OmpA/MotB_C

EC number: NA

Molecular weight: Translated: 18911; Mature: 18911

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: PS01068 OMPA_1; PS51123 OMPA_2; PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAGSFYKLGLLVASAVLVAACSKTPGSADGGAAVGDGDATAQGLGQMTHFAGQEPGESY
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCCC
TTQAPHNQLYLFAYDDSTLASKYLPSVNAQAEYLKTHPGARVMIAGHTDERGSREYNVAL
CCCCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHHCCCCCEEEEEECCCCCCCCEEEEEE
GERRADTVAEILRMAGVSRQQIRVVSYGKERPANYGHDEASHAQNRRVEFIYEATR
CCCHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCCHHHHHCCCEEEEEECCC
>Mature Secondary Structure
MKAGSFYKLGLLVASAVLVAACSKTPGSADGGAAVGDGDATAQGLGQMTHFAGQEPGESY
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCCC
TTQAPHNQLYLFAYDDSTLASKYLPSVNAQAEYLKTHPGARVMIAGHTDERGSREYNVAL
CCCCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHHCCCCCEEEEEECCCCCCCCEEEEEE
GERRADTVAEILRMAGVSRQQIRVVSYGKERPANYGHDEASHAQNRRVEFIYEATR
CCCHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCCHHHHHCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766377; 1855972