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The map label for this gene is rpoZ

Identifier: 54294907

GI number: 54294907

Start: 2227587

End: 2227790

Strand: Reverse

Name: rpoZ

Synonym: lpl1986

Alternate gene names: 54294907

Gene position: 2227790-2227587 (Counterclockwise)

Preceding gene: 54294908

Following gene: 54294906

Centisome position: 66.59

GC content: 41.67

Gene sequence:

>204_bases
ATGGCACGAGTAACAGTTGAAGATTGTTTAGAACATGTTAAAAACCGGTTTGAGCTGGTTATGGTTGCTACCAAACGAGC
AAGGCAAATTGCAGTTCGTGGCGATCAACCCATGGTTGAATGGGAAAATGATAAGCCTACTGTAGTAGCACTTAGGGAAA
TTGCCGAAGGTTATGTTACAGCGGACATTTTGGATGAAGATTAA

Upstream 100 bases:

>100_bases
AGGCAAATAAACAAGCCAAATTGCTTTCTTTCCTCTTGTCATCGCAGTAAAATAAAAGATTTGAGTTAGTATTTGTTCTA
ATAACCTAGAGGTGGATTTT

Downstream 100 bases:

>100_bases
AATGAGTTATTGACTTTGCCTTGGGAATATTAGCCATTCTAAAATATACCTCTTGGTAATCAAGTTATGGTATTTAAGCA
AAGCAAAGGGAACAAGGGCG

Product: RNA polymerase omega subunit

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MARVTVEDCLEHVKNRFELVMVATKRARQIAVRGDQPMVEWENDKPTVVALREIAEGYVTADILDED

Sequences:

>Translated_67_residues
MARVTVEDCLEHVKNRFELVMVATKRARQIAVRGDQPMVEWENDKPTVVALREIAEGYVTADILDED
>Mature_66_residues
ARVTVEDCLEHVKNRFELVMVATKRARQIAVRGDQPMVEWENDKPTVVALREIAEGYVTADILDED

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=65, Percent_Identity=60, Blast_Score=81, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_LEGPA (Q5X3P3)

Other databases:

- EMBL:   CR628336
- RefSeq:   YP_124305.1
- ProteinModelPortal:   Q5X3P3
- STRING:   Q5X3P3
- GeneID:   3119625
- GenomeReviews:   CR628336_GR
- KEGG:   lpp:lpp1991
- LegioList:   lpp1991
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   NRFLLVM
- ProtClustDB:   PRK00392
- BioCyc:   LPNE297246:LPP1991-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7672; Mature: 7541

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCLEHVKNRFELVMVATKRARQIAVRGDQPMVEWENDKPTVVALREIAEGYVT
CCEEEHHHHHHHHHHHHEEEEEECCCCEEEEECCCCCCEEECCCCCCEEHHHHHHCCCEE
ADILDED
EEEECCC
>Mature Secondary Structure 
ARVTVEDCLEHVKNRFELVMVATKRARQIAVRGDQPMVEWENDKPTVVALREIAEGYVT
CEEEHHHHHHHHHHHHEEEEEECCCCEEEEECCCCCCEEECCCCCCEEHHHHHHCCCEE
ADILDED
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA