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The map label for this gene is secF [H]

Identifier: 54294897

GI number: 54294897

Start: 2216709

End: 2217626

Strand: Reverse

Name: secF [H]

Synonym: lpl1976

Alternate gene names: 54294897

Gene position: 2217626-2216709 (Counterclockwise)

Preceding gene: 54294898

Following gene: 54294894

Centisome position: 66.28

GC content: 39.65

Gene sequence:

>918_bases
ATGGAATTTTTTAATCCAAATTCAAAAATAGATTTTATGGGCGCGCGCCGTTGGACTGCATTGTTTTCTATATTGATTTT
TGTAGTGTCTATTGGCGCATTGATGATTAATGGTTTGAAATGGGGATTGGATTTTACTGGTGGAACGCAAATTGAAATCA
GTTACTCCAAAGCGGCTGATTTACCTTTAATTAGAGAAAATCTTAATAAAGCGGGTTTTAAAGAAGCTCAAGTGGTTAGT
TATGGTACATCAAAAGATGTACTTATCAGCATTGCACCGAGAGCGGATAAACAGCAGAGCATGCTGGTAGATCAGGTGAT
GGAAGTACTGCCTGGAGCAGTAAAGCAAAGAGTTGATTTTGTTGGTCCACAAGTTGGACAAGAATTAGCAACGAAAGGGG
CTCTTGCGATTATTGTGTCCTTGTTAGCCACGATGATCTATATCGCTATGCGGTTTGAATATAAACTCGCTGTAAGTTCA
GCAGTGGCTTTGATTCATGATCCGGTATTGATTCTGGGCGTTTTTGCTTTGTTCGGAATTGAATTTGATCTGAAGGCCCT
TGCTGGGTTGTTGGCCGTTATTGGCTATTCCTTGAATGATACCATTGTTGTCTTTGATCGTGTTCGAGAAAATTTTGTAA
AAATTCGCCGAACAAGTCCAATAGATATTATGAATATTTCAATCAATCAAACTCTCTCAAGAACGATCATGACATCTGTG
TTGACGCTGTTTGTTGTGGTTGCGCTTTTTGTCTATGGGGGTGAGGCGATATATGGGTTTTCATTGGCATTGATTATAGG
AATAGTAATAGGTACTTACTCTTCAATTTATGTTGCTGGCGCCTTAGCAGTAACCATGGGGTTGGATAATAAGGATTTTC
TACCTAGTCATCGCAGGGAGGTGGATGATAGACCTTGA

Upstream 100 bases:

>100_bases
TATGTTAACTGGTATTACTTACACCAGGGCTATTGTGAATTGGTATTATGGTGGACGTAATGTCAAAAAATTATCTATAG
GCATATAAGGCGAGACTCAG

Downstream 100 bases:

>100_bases
TGTGGGGGTCTTATTATCATCCCTGTATTATACTCTTATTATCCGCTTCCTGACAGTCGCGGCTCGGCTTTGCCCAATTC
GACGAAATTCAAAGTCAGCC

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MEFFNPNSKIDFMGARRWTALFSILIFVVSIGALMINGLKWGLDFTGGTQIEISYSKAADLPLIRENLNKAGFKEAQVVS
YGTSKDVLISIAPRADKQQSMLVDQVMEVLPGAVKQRVDFVGPQVGQELATKGALAIIVSLLATMIYIAMRFEYKLAVSS
AVALIHDPVLILGVFALFGIEFDLKALAGLLAVIGYSLNDTIVVFDRVRENFVKIRRTSPIDIMNISINQTLSRTIMTSV
LTLFVVVALFVYGGEAIYGFSLALIIGIVIGTYSSIYVAGALAVTMGLDNKDFLPSHRREVDDRP

Sequences:

>Translated_305_residues
MEFFNPNSKIDFMGARRWTALFSILIFVVSIGALMINGLKWGLDFTGGTQIEISYSKAADLPLIRENLNKAGFKEAQVVS
YGTSKDVLISIAPRADKQQSMLVDQVMEVLPGAVKQRVDFVGPQVGQELATKGALAIIVSLLATMIYIAMRFEYKLAVSS
AVALIHDPVLILGVFALFGIEFDLKALAGLLAVIGYSLNDTIVVFDRVRENFVKIRRTSPIDIMNISINQTLSRTIMTSV
LTLFVVVALFVYGGEAIYGFSLALIIGIVIGTYSSIYVAGALAVTMGLDNKDFLPSHRREVDDRP
>Mature_305_residues
MEFFNPNSKIDFMGARRWTALFSILIFVVSIGALMINGLKWGLDFTGGTQIEISYSKAADLPLIRENLNKAGFKEAQVVS
YGTSKDVLISIAPRADKQQSMLVDQVMEVLPGAVKQRVDFVGPQVGQELATKGALAIIVSLLATMIYIAMRFEYKLAVSS
AVALIHDPVLILGVFALFGIEFDLKALAGLLAVIGYSLNDTIVVFDRVRENFVKIRRTSPIDIMNISINQTLSRTIMTSV
LTLFVVVALFVYGGEAIYGFSLALIIGIVIGTYSSIYVAGALAVTMGLDNKDFLPSHRREVDDRP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=312, Percent_Identity=43.5897435897436, Blast_Score=266, Evalue=1e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 33353; Mature: 33353

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFFNPNSKIDFMGARRWTALFSILIFVVSIGALMINGLKWGLDFTGGTQIEISYSKAAD
CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCEEEEECCCCCC
LPLIRENLNKAGFKEAQVVSYGTSKDVLISIAPRADKQQSMLVDQVMEVLPGAVKQRVDF
CHHHHHHCCCCCCCCCCEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHH
VGPQVGQELATKGALAIIVSLLATMIYIAMRFEYKLAVSSAVALIHDPVLILGVFALFGI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EFDLKALAGLLAVIGYSLNDTIVVFDRVRENFVKIRRTSPIDIMNISINQTLSRTIMTSV
CCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHH
LTLFVVVALFVYGGEAIYGFSLALIIGIVIGTYSSIYVAGALAVTMGLDNKDFLPSHRRE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHCC
VDDRP
CCCCC
>Mature Secondary Structure
MEFFNPNSKIDFMGARRWTALFSILIFVVSIGALMINGLKWGLDFTGGTQIEISYSKAAD
CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCEEEEECCCCCC
LPLIRENLNKAGFKEAQVVSYGTSKDVLISIAPRADKQQSMLVDQVMEVLPGAVKQRVDF
CHHHHHHCCCCCCCCCCEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHH
VGPQVGQELATKGALAIIVSLLATMIYIAMRFEYKLAVSSAVALIHDPVLILGVFALFGI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EFDLKALAGLLAVIGYSLNDTIVVFDRVRENFVKIRRTSPIDIMNISINQTLSRTIMTSV
CCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHH
LTLFVVVALFVYGGEAIYGFSLALIIGIVIGTYSSIYVAGALAVTMGLDNKDFLPSHRRE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHCC
VDDRP
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]