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The map label for this gene is yoaA [H]

Identifier: 54294809

GI number: 54294809

Start: 2110658

End: 2112616

Strand: Reverse

Name: yoaA [H]

Synonym: lpl1886

Alternate gene names: 54294809

Gene position: 2112616-2110658 (Counterclockwise)

Preceding gene: 54294810

Following gene: 54294808

Centisome position: 63.14

GC content: 41.3

Gene sequence:

>1959_bases
GTGGAAGAAATAACCACTTTCGCTGAAACCTGTCGGCGAACTCTCAGTGAGAAAGGAAGATTATCAACTGCTATTCCAGG
CTTTGTGGCAAGAGCACCACAAGCCGATTTGGCAGTGGCTATAGCCAATGCTATTGTTCAGCGATCGATTTTGGTAGCTG
AGGCAGGAACAGGAACAGGTAAGACCTTTGCTTATTTATTGCCTTGTTTGTTAAGTGGTAAAAAAGCGCTTATCTCAACA
GCAACCAAAACGCTTCAAGATCAACTTTTTCAAAAAGATTTGCCAACCTTGATCAGAGCTTTGGGTTTATCGGTACGAAT
CCAGAATTTAAAGGGGCGTTCCAATTATATTTGTCAATATCGAGTTGAGAAGCATGCTGAAGAAGGACAATTTCAAAGCC
CGCAATGTGCTCACGAAATACTCCATGTCAGAGATAAATTATCTCAAATGCAAGAAGGCGTTCGCTCTGAATTACCTGAA
ATTAATGAAGACTCCTCGGTATGGCATTATGTCACATCCACTACCGATAACTGTCTTGGTGCAGAATGTCCGAATCATGA
AACCTGTTTTTTAGTGAAAGCGCGTAAGCGAGCGATGGATGCTGATATTGTCGTTATCAATCACCATCTTTTTTTTGCTG
ATTCTCAGTTAAAAAAAGAAGGCTTTAGCGAACTATTACCTGGTGTTGATGTCGTAGTGTTTGACGAAGCTCATCAGCTT
GCAGACATCGCCTCTAATTTCAATGGAGAGCGCCTGGGAACACGTCAATTCAAAGACTTGGTCGCTGATATGCTTAATGA
GTGGCCAATCCTGGATTTAGCCAATCAACCTCTAAAGTCTATAAGTCATAAAGCAGACAAACTGGTGGATCAACTGCTCA
ATGCGTTGCCGACTCGTGAGGAACGAATCAGTTGGGATTTGGTTAAACGAAATAAGGAGTTTATGGAGGCGTGGGATACC
TGGTTATCTTTAAAGGATGAGTTAGTTCAATGCCTGGAATCAGAGGATGCCACGGATATTCCCGGGTTAAAAAGATGCAA
AGAACGCCTTTTGGATTTGGAAACCATCTTGCTTTCCTTTACTGAGGAAAATAATAATAAAATTCGTTGGTTGGAACGTT
TTAAACACACTCTCGTTTTTCATGCCACCCCGTATGACGTTGCTGAATCATTTAGTCAATTATTAAAGCACCAGTCATGT
GCCTATATTTTTACATCGGCTACGCTTACTATGGCATCGGCTTTTGATAGTTTTTGTAAACCTCTGGGATTAGATAAAGT
GCAGACTTTGTTATTATCCAGCCCCTTTGATTACCAGCAACAGGCACTGCTTTATTTGCCTCGAGGAATACCTGATCCTA
AGGATGCTCATTATTATGACGCTTTGCTGGAAAAGGCTTTACCTGTTATCGAGGCTTGCGGTGGCCGTTGCTTTTTCCTT
TTTACCAGTCATAAAGCAGTAAAATTGGTTGCTCAAATGATGAGCAATACTTTAAAATATCCGCTTTTGATTCAGGGTGA
TGAAGCAAAACCCATTCTCCTGTCTCGATTCAGGCAATTGGGCAATGCTGTGCTTTTAGGCACTTCTACTTTTTGGGAAG
GTGTTGATGTCAAAGGGGAGGCGCTTTCTTGCGTGATTATAGATAAATTACCCTTTGCTAACCCCGTTGATCCTGTAATT
CGTGGCAGAATGTCTTATTTAAAGAAAAAAGGGCTTTCCGGTTTTGATGAATTATCCTTGCCAAATGCCGTCATTGCATT
AAAACAGGGAGTAGGGCGATTGATTCGTGACATCACCGATAAAGGTATATTAATGATAGCGGATCCCCGTTTGACTGGTA
GAGAGTATGGTCGAACTATTTTGGCAAGTTTACCTGGTCTTCCGAAAACTCGGGATGAAGAAAAAGTACTGCATTTTATT
AAAGAGTTGGCTTTAAATGATGAAACTGTTAGCGATTGA

Upstream 100 bases:

>100_bases
TATCCAAAACCTGGCCTAATATTACTGCTAAAAAGGATGCTCCTTCTGATGCCAAGGATTGGGAAGAAGTAAAGGACAAA
CTTCAATATTTGCAAAAAGA

Downstream 100 bases:

>100_bases
TACCTCAACTGAACTGGCTAGTGTCGCCACCCTTATAGATGACGAAATCATAAGCAGGGAGCAGGATAGTCAAAGAATCC
ATGCGCAATTGATTTTACCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 652; Mature: 652

Protein sequence:

>652_residues
MEEITTFAETCRRTLSEKGRLSTAIPGFVARAPQADLAVAIANAIVQRSILVAEAGTGTGKTFAYLLPCLLSGKKALIST
ATKTLQDQLFQKDLPTLIRALGLSVRIQNLKGRSNYICQYRVEKHAEEGQFQSPQCAHEILHVRDKLSQMQEGVRSELPE
INEDSSVWHYVTSTTDNCLGAECPNHETCFLVKARKRAMDADIVVINHHLFFADSQLKKEGFSELLPGVDVVVFDEAHQL
ADIASNFNGERLGTRQFKDLVADMLNEWPILDLANQPLKSISHKADKLVDQLLNALPTREERISWDLVKRNKEFMEAWDT
WLSLKDELVQCLESEDATDIPGLKRCKERLLDLETILLSFTEENNNKIRWLERFKHTLVFHATPYDVAESFSQLLKHQSC
AYIFTSATLTMASAFDSFCKPLGLDKVQTLLLSSPFDYQQQALLYLPRGIPDPKDAHYYDALLEKALPVIEACGGRCFFL
FTSHKAVKLVAQMMSNTLKYPLLIQGDEAKPILLSRFRQLGNAVLLGTSTFWEGVDVKGEALSCVIIDKLPFANPVDPVI
RGRMSYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITDKGILMIADPRLTGREYGRTILASLPGLPKTRDEEKVLHFI
KELALNDETVSD

Sequences:

>Translated_652_residues
MEEITTFAETCRRTLSEKGRLSTAIPGFVARAPQADLAVAIANAIVQRSILVAEAGTGTGKTFAYLLPCLLSGKKALIST
ATKTLQDQLFQKDLPTLIRALGLSVRIQNLKGRSNYICQYRVEKHAEEGQFQSPQCAHEILHVRDKLSQMQEGVRSELPE
INEDSSVWHYVTSTTDNCLGAECPNHETCFLVKARKRAMDADIVVINHHLFFADSQLKKEGFSELLPGVDVVVFDEAHQL
ADIASNFNGERLGTRQFKDLVADMLNEWPILDLANQPLKSISHKADKLVDQLLNALPTREERISWDLVKRNKEFMEAWDT
WLSLKDELVQCLESEDATDIPGLKRCKERLLDLETILLSFTEENNNKIRWLERFKHTLVFHATPYDVAESFSQLLKHQSC
AYIFTSATLTMASAFDSFCKPLGLDKVQTLLLSSPFDYQQQALLYLPRGIPDPKDAHYYDALLEKALPVIEACGGRCFFL
FTSHKAVKLVAQMMSNTLKYPLLIQGDEAKPILLSRFRQLGNAVLLGTSTFWEGVDVKGEALSCVIIDKLPFANPVDPVI
RGRMSYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITDKGILMIADPRLTGREYGRTILASLPGLPKTRDEEKVLHFI
KELALNDETVSD
>Mature_652_residues
MEEITTFAETCRRTLSEKGRLSTAIPGFVARAPQADLAVAIANAIVQRSILVAEAGTGTGKTFAYLLPCLLSGKKALIST
ATKTLQDQLFQKDLPTLIRALGLSVRIQNLKGRSNYICQYRVEKHAEEGQFQSPQCAHEILHVRDKLSQMQEGVRSELPE
INEDSSVWHYVTSTTDNCLGAECPNHETCFLVKARKRAMDADIVVINHHLFFADSQLKKEGFSELLPGVDVVVFDEAHQL
ADIASNFNGERLGTRQFKDLVADMLNEWPILDLANQPLKSISHKADKLVDQLLNALPTREERISWDLVKRNKEFMEAWDT
WLSLKDELVQCLESEDATDIPGLKRCKERLLDLETILLSFTEENNNKIRWLERFKHTLVFHATPYDVAESFSQLLKHQSC
AYIFTSATLTMASAFDSFCKPLGLDKVQTLLLSSPFDYQQQALLYLPRGIPDPKDAHYYDALLEKALPVIEACGGRCFFL
FTSHKAVKLVAQMMSNTLKYPLLIQGDEAKPILLSRFRQLGNAVLLGTSTFWEGVDVKGEALSCVIIDKLPFANPVDPVI
RGRMSYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITDKGILMIADPRLTGREYGRTILASLPGLPKTRDEEKVLHFI
KELALNDETVSD

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=634, Percent_Identity=43.3753943217666, Blast_Score=490, Evalue=1e-139,
Organism=Escherichia coli, GI1787018, Length=270, Percent_Identity=31.8518518518519, Blast_Score=99, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 73080; Mature: 73080

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEITTFAETCRRTLSEKGRLSTAIPGFVARAPQADLAVAIANAIVQRSILVAEAGTGTG
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCC
KTFAYLLPCLLSGKKALISTATKTLQDQLFQKDLPTLIRALGLSVRIQNLKGRSNYICQY
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEE
RVEKHAEEGQFQSPQCAHEILHVRDKLSQMQEGVRSELPEINEDSSVWHYVTSTTDNCLG
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC
AECPNHETCFLVKARKRAMDADIVVINHHLFFADSQLKKEGFSELLPGVDVVVFDEAHQL
CCCCCCCEEEEEHHHHHCCCCCEEEEEEEEEECCHHHHHCCHHHHCCCCEEEEECCHHHH
ADIASNFNGERLGTRQFKDLVADMLNEWPILDLANQPLKSISHKADKLVDQLLNALPTRE
HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCH
ERISWDLVKRNKEFMEAWDTWLSLKDELVQCLESEDATDIPGLKRCKERLLDLETILLSF
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
TEENNNKIRWLERFKHTLVFHATPYDVAESFSQLLKHQSCAYIFTSATLTMASAFDSFCK
HCCCCCHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHC
PLGLDKVQTLLLSSPFDYQQQALLYLPRGIPDPKDAHYYDALLEKALPVIEACGGRCFFL
CCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
FTSHKAVKLVAQMMSNTLKYPLLIQGDEAKPILLSRFRQLGNAVLLGTSTFWEGVDVKGE
EECCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEECCHHHCCCCCCCC
ALSCVIIDKLPFANPVDPVIRGRMSYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITD
EEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCC
KGILMIADPRLTGREYGRTILASLPGLPKTRDEEKVLHFIKELALNDETVSD
CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MEEITTFAETCRRTLSEKGRLSTAIPGFVARAPQADLAVAIANAIVQRSILVAEAGTGTG
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCC
KTFAYLLPCLLSGKKALISTATKTLQDQLFQKDLPTLIRALGLSVRIQNLKGRSNYICQY
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEE
RVEKHAEEGQFQSPQCAHEILHVRDKLSQMQEGVRSELPEINEDSSVWHYVTSTTDNCLG
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC
AECPNHETCFLVKARKRAMDADIVVINHHLFFADSQLKKEGFSELLPGVDVVVFDEAHQL
CCCCCCCEEEEEHHHHHCCCCCEEEEEEEEEECCHHHHHCCHHHHCCCCEEEEECCHHHH
ADIASNFNGERLGTRQFKDLVADMLNEWPILDLANQPLKSISHKADKLVDQLLNALPTRE
HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCH
ERISWDLVKRNKEFMEAWDTWLSLKDELVQCLESEDATDIPGLKRCKERLLDLETILLSF
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
TEENNNKIRWLERFKHTLVFHATPYDVAESFSQLLKHQSCAYIFTSATLTMASAFDSFCK
HCCCCCHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHC
PLGLDKVQTLLLSSPFDYQQQALLYLPRGIPDPKDAHYYDALLEKALPVIEACGGRCFFL
CCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
FTSHKAVKLVAQMMSNTLKYPLLIQGDEAKPILLSRFRQLGNAVLLGTSTFWEGVDVKGE
EECCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEECCHHHCCCCCCCC
ALSCVIIDKLPFANPVDPVIRGRMSYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITD
EEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCC
KGILMIADPRLTGREYGRTILASLPGLPKTRDEEKVLHFIKELALNDETVSD
CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]